PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g010610.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 518aa    MW: 56115.4 Da    PI: 5.1497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g010610.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09329377355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopim05g010610.0.1 329 NSHSLAERIRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 377
                         58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17324394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-10324381No hitNo description
PROSITE profilePS5088815.466326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-17327393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-7329377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDIEIKNDSE PEKRNDQEVS MNYQSPNVSS EWQLNGSNLT NSSMGMVDSF CPTTWDQPTT  60
NSSNLGFCDA SVQMDLGPFR AGVDSTLGPN WTPSNAVLKG GMFLPPVPMM LPQSLAQFPA  120
DSGFIERAAR FSCFSGGNFG DMMNPFSIPE SSMNPYYRGL SSMQGPQEVL ANNGLKSPQK  180
LQHLSNVAES SKDVSLTHRD TQRSPLKNEK KSENVAKSQD EAKEVAGVSG NESDEAGCSG  240
RQEETEGAGE ESCGKNIGSK KRKRGGQDTE PDQMKGAQQP PSEIQKGEQN LNPIASKPGG  300
KNGKQGSQFS DPTKEEYIHV RARRGQATNS HSLAERIRRE KISERMKYLQ DLVPGCNKVT  360
GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRLDFDIDG LLAKDILQSR AGPSSSLAFP  420
PDMTMAYSPL HPPQAGLLQS GLPGYGFPSE GFRRSINPHL ATTSCGPGDY KDPSSQAPNE  480
WDNELHNIVQ MGLNSSVPSS SQDLSGSLPA GQMKAEP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239006.10.0transcription factor bHLH49
RefseqXP_019069644.10.0transcription factor bHLH49
TrEMBLA0A3Q7GC130.0A0A3Q7GC13_SOLLC; Uncharacterized protein
STRINGSolyc05g010610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-108bHLH family protein