PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim05g005380.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 358aa MW: 38038.1 Da PI: 5.9629

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim05g005380.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	158	1.5e-49	53	146	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqd+f+Pianv+rim+++lP++akis+ +k+t+qecvsefisf+t ea+d+cq e+rkt++++d+lwa++++Gf+dy+epl++yl++yre Sopim05g005380.0.1 53 REQDQFMPIANVVRIMRRILPSHAKISDGSKQTIQECVSEFISFITLEANDRCQSEQRKTVTPEDILWAMSKVGFDDYIEPLTLYLNQYRE 143 89***************************************************************************************** PP NF-YB 93 leg 95 ++g Sopim05g005380.0.1 144 FDG 146 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.7E-45	49	152	IPR009072	Histone-fold
SuperFamily	SSF47113	2.17E-35	55	152	IPR009072	Histone-fold
Pfam	PF00808	2.7E-23	58	122	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.9E-14	86	104	No hit	No description
PRINTS	PR00615	4.9E-14	105	123	No hit	No description
PRINTS	PR00615	4.9E-14	124	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MTNGNHVGSG NGGFHSYRRS PQPTPARSPS SDMERSMGMP AHLNQAITEC ITREQDQFMP 60 IANVVRIMRR ILPSHAKISD GSKQTIQECV SEFISFITLE ANDRCQSEQR KTVTPEDILW 120 AMSKVGFDDY IEPLTLYLNQ YREFDGGESE SLRGETLLVK QQMAHDHGYF VSPPPMDNND 180 MQGDASNGST SQCAVASVDS DIESPAEEGY SRSNAAATLP SPLLGYSRSN AAATLPSPLS 240 GYSRSNAAAT LPSPLSGYSR SNAAATLPSP LSGYSRSNAA ATLPSPLSGY SRSNAAATLP 300 SPLSGYSRSN AAATLPSPLL GYSRSNAAAT LPSPLLGYSR SNAAATPPSP TTWECER*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MTNGNHVGSG NGGFHSYRRS PQPTPARSPS SDMERSMGMP AHLNQAITEC ITREQDQFMP  60
IANVVRIMRR ILPSHAKISD GSKQTIQECV SEFISFITLE ANDRCQSEQR KTVTPEDILW  120
AMSKVGFDDY IEPLTLYLNQ YREFDGGESE SLRGETLLVK QQMAHDHGYF VSPPPMDNND  180
MQGDASNGST SQCAVASVDS DIESPAEEGY SRSNAAATLP SPLLGYSRSN AAATLPSPLS  240
GYSRSNAAAT LPSPLSGYSR SNAAATLPSP LSGYSRSNAA ATLPSPLSGY SRSNAAATLP  300
SPLSGYSRSN AAATLPSPLL GYSRSNAAAT LPSPLLGYSR SNAAATPPSP TTWECER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-52	53	143	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC204082	0.0	AC204082.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence.
GenBank	HG975517	0.0	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010320573.1	1e-157	nuclear transcription factor Y subunit B-6-like
STRING	Solyc05g005380.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.1	1e-59	nuclear factor Y, subunit B6