PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g005240.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21514.5 Da PI: 8.157 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 179.1 | 2.5e-55 | 7 | 158 | 2 | 165 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekee 90 ++f+ + +CyvqC++C+til+vsvP +sl kvvtvrCGhCt+lls+nl k s +l a+ ++ + +++ ++++++++ n k ++ Sopim05g005240.0.1 7 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKVVTVRCGHCTTLLSLNLIKPSlHLFASFDQ---THQPPEVDKDETDDANKKNSNS--- 91 789999***********************973699**************98876266666665...4445444444333332222111... PP YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 + ++ e++ +p + v++PPekrqr+Psayn+fikeei+r+k+ P+++h++afs+aaknWahfP+ Sopim05g005240.0.1 92 -----DEE---DQLENNVLPLNQVVNKPPEKRQRAPSAYNCFIKEEIKRLKTLYPNMTHKQAFSTAAKNWAHFPP 158 .....111...222334455555689***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.6E-55 | 12 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 106 | 160 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.3E-5 | 109 | 160 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 0.00307 | 117 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSTLNNHLFE LQDTICYVQC GYCTTILLVS VPCSSLCNKV VTVRCGHCTT LLSLNLIKPS 60 LHLFASFDQT HQPPEVDKDE TDDANKKNSN SDEEDQLENN VLPLNQVVNK PPEKRQRAPS 120 AYNCFIKEEI KRLKTLYPNM THKQAFSTAA KNWAHFPPSQ HRGGCSLGER KMAKVSAARN 180 SMVPRDSNGL IP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC188781 | 9e-67 | AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence. | |||
GenBank | HG975517 | 9e-67 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321151.2 | 1e-143 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 1e-55 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A3G4YK59 | 1e-142 | A0A3G4YK59_SOLCE; INNER NO OUTER | ||||
TrEMBL | A0A3G4YK72 | 1e-142 | A0A3G4YK72_SOLPI; INNER NO OUTER | ||||
TrEMBL | A0A3Q7G929 | 1e-142 | A0A3Q7G929_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g005240.1.1 | 1e-143 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-58 | YABBY family protein |
Publications ? help Back to Top | |||
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