PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g056270.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CAMTA

Protein Properties

Length: 1022aa MW: 114147 Da PI: 6.0806

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g056270.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.4	1.1e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 l+ ++rwl++ ei++iL+n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+sw+kk+dgktv+E+he+LK g+++vl+cyYah+een+ Sopim04g056270.0.1 20 LEAQHRWLRPAEICEILKNYQKFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHSWRKKRDGKTVKEAHERLKAGSIDVLHCYYAHGEENE 110 5679************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrr+yw+Leee+++ivlvhy+evk Sopim04g056270.0.1 111 NFQRRSYWMLEEEMSHIVLVHYREVK 136 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.727	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.8E-79	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.0E-50	21	134	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.9E-4	513	598	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	5.6E-16	514	600	IPR014756	Immunoglobulin E-set
Pfam	PF01833	8.9E-5	514	592	IPR002909	IPT domain
SuperFamily	SSF48403	4.82E-19	618	734	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.9E-19	619	735	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.07E-15	620	732	No hit	No description
PROSITE profile	PS50297	19.147	623	744	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	6.1E-9	645	735	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.259	673	705	IPR002110	Ankyrin repeat
SMART	SM00248	0.0068	673	702	IPR002110	Ankyrin repeat
SMART	SM00248	120	712	741	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.45E-6	844	897	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	48	846	868	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.126	848	876	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.098	848	867	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0042	869	891	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.285	870	894	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.6E-4	872	891	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1022 aa Download sequence Send to blast
MADSRRYGLN AQLDIEQILL EAQHRWLRPA EICEILKNYQ KFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHSWRKKRD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWML 120 EEEMSHIVLV HYREVKGNRT NFSRIREPQQ VTPDLQETDE DVHSSEVDSS ASAKFYPNDY 180 QVNSQVTDTT SFSSAQASEY EDAESVYNQH PTSGFHSFLD AQPSAGDGLA VPYHPIPFSN 240 DQVQFAGSSG TSFSSIPPGN GNTSTANTYV PSRNLDFASW GTISVNNPAA YQSLHFQPSG 300 QSSANNMMHE QGNTTMGQIC SNDFTRQEHE NHIDGLGNWQ TSEVDSSFIS KWSMDQKLNP 360 DLTSGQTIGS SGVYGVEHHN SLEASQLLPA QQDKHPIQNE LQSQLSDANI GGSLNADLDH 420 NLSLGVKTDY SALKQPLLDG VLKREGLKKL DSFDRWISKE LGDVSESHMQ SNSSSYWDNV 480 GDEDGVGNST IASQVQLDTY VLSPSLAQDQ IFSIIDFSPN WAFSGSEIKV LITGRFLKSQ 540 QEVENCSWAC MFGELEVPAE VIADGVLRCH TPVQKAGRVP FYITCSNRLA CSEVREFEFR 600 VTEEKVKDQL LQKLLKEKLH VWLLQKVAEG GKGPNILDEG GQGVLHFAAA LGYDWAVPPT 660 IAAGVSVNFR DVNGWTALHW AASYGRERTV GFLISLGAAT GALTDPTPKH PSGRTPADLA 720 SSNGHKGIAG YLAESSLSSH LFSLELKEKK QGENEQAFGE AVQTVSERTA TPAWDGDWSH 780 GVSLKDSLAA VRNATQAAAR IHQVFRVQSF QRKQLKEYGG SEFGLSDERA LSLLAMKTNR 840 AGQHDEPHAA AVRIQNKFRS WKGRRDFLLI RQRIIKIQAH VRGHQVRNKY KNIIWSVGIL 900 EKVILRWRRK GSGLRGFKPE APTEGSNMQD QPVQEDDYDF LKEGRKQTEE RLQKALERVK 960 SMVQYPEARD QYRRLLNVVS DMQEPNSTAA SYNSAEAVDF NDDLIDLGDL LDDDTFMPTA 1020 P*

Sequence ? help Back to Top

Protein Sequence Length: 1022 aa Download sequence Send to blast

MADSRRYGLN AQLDIEQILL EAQHRWLRPA EICEILKNYQ KFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHSWRKKRD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEEMSHIVLV HYREVKGNRT NFSRIREPQQ VTPDLQETDE DVHSSEVDSS ASAKFYPNDY  180
QVNSQVTDTT SFSSAQASEY EDAESVYNQH PTSGFHSFLD AQPSAGDGLA VPYHPIPFSN  240
DQVQFAGSSG TSFSSIPPGN GNTSTANTYV PSRNLDFASW GTISVNNPAA YQSLHFQPSG  300
QSSANNMMHE QGNTTMGQIC SNDFTRQEHE NHIDGLGNWQ TSEVDSSFIS KWSMDQKLNP  360
DLTSGQTIGS SGVYGVEHHN SLEASQLLPA QQDKHPIQNE LQSQLSDANI GGSLNADLDH  420
NLSLGVKTDY SALKQPLLDG VLKREGLKKL DSFDRWISKE LGDVSESHMQ SNSSSYWDNV  480
GDEDGVGNST IASQVQLDTY VLSPSLAQDQ IFSIIDFSPN WAFSGSEIKV LITGRFLKSQ  540
QEVENCSWAC MFGELEVPAE VIADGVLRCH TPVQKAGRVP FYITCSNRLA CSEVREFEFR  600
VTEEKVKDQL LQKLLKEKLH VWLLQKVAEG GKGPNILDEG GQGVLHFAAA LGYDWAVPPT  660
IAAGVSVNFR DVNGWTALHW AASYGRERTV GFLISLGAAT GALTDPTPKH PSGRTPADLA  720
SSNGHKGIAG YLAESSLSSH LFSLELKEKK QGENEQAFGE AVQTVSERTA TPAWDGDWSH  780
GVSLKDSLAA VRNATQAAAR IHQVFRVQSF QRKQLKEYGG SEFGLSDERA LSLLAMKTNR  840
AGQHDEPHAA AVRIQNKFRS WKGRRDFLLI RQRIIKIQAH VRGHQVRNKY KNIIWSVGIL  900
EKVILRWRRK GSGLRGFKPE APTEGSNMQD QPVQEDDYDF LKEGRKQTEE RLQKALERVK  960
SMVQYPEARD QYRRLLNVVS DMQEPNSTAA SYNSAEAVDF NDDLIDLGDL LDDDTFMPTA  1020
P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4hb5_A	3e-12	624	732	20	122	Engineered Protein
4hb5_B	3e-12	624	732	20	122	Engineered Protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU170838	0.0	GU170838.1 Solanum lycopersicum cultivar Rutgers calmodulin-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177324.1	0.0	PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A3Q7G683	0.0	A0A3Q7G683_SOLLC; Uncharacterized protein
STRING	Solyc04g056270.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2230	21	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-149	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]