PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g121660.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 543aa MW: 59235.1 Da PI: 8.8675

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g121660.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sopim03g121660.0.1 99 FVCEICNKGFQRDQNLQLHRRGH 121 89*******************88 PP
2	zf-C2H2	13.3	0.00026	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Sopim03g121660.0.1 175 WKCEKCSKRYAVQSDWKAHSKTC 197 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.16E-6	98	121	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	98	121	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	99	121	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	99	121	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	101	121	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	140	170	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	163	196	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.16E-6	170	195	No hit	No description
SMART	SM00355	130	175	195	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MKDLMNQQAQ VPGVVMEENM SNLTSASGEA SVSSSNRNDN NNNNNNNIYP HHQYNFAPPN 60 QQTQPAQQIK KKRNQPGNPD PEAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG 120 HNLPWKLKQR TSKEIRKKVY VCPETSCVHH DPARALGDLT GIKKHFCRKH GEKKWKCEKC 180 SKRYAVQSDW KAHSKTCGTK EYRCDCGTLF SRRDSFITHR AFCDALAEES ARAITANPIL 240 PSQAGSSTSQ MNFQFQPFNH EIPVTFSLKK EQQTGFNLRP EIPPWLLVGG GGGPGPGPGP 300 PQPQPIDLSS SIFQSSRFSD QDYTQSHQHH QQGFMNPNPS LSGPTSGAMA SPHISATALL 360 QKAAQMGATM SNKASTVSAV SSGPGPAMLM RPHQIHVSAT ATAAESVSNA TDFGLNLSSR 420 EDLPTGFFNS LASYGNKAAN PSAVITPVTI PLSTAPHPTP STLQDMMNSF SSVNPTGFEG 480 SNFEDPFSIL NPKNNNGSGN DDMTKDFLGL RPLSHSDIFN IAGLVNSTPN ETQSQNHKTW 540 QS*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MKDLMNQQAQ VPGVVMEENM SNLTSASGEA SVSSSNRNDN NNNNNNNIYP HHQYNFAPPN  60
QQTQPAQQIK KKRNQPGNPD PEAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG  120
HNLPWKLKQR TSKEIRKKVY VCPETSCVHH DPARALGDLT GIKKHFCRKH GEKKWKCEKC  180
SKRYAVQSDW KAHSKTCGTK EYRCDCGTLF SRRDSFITHR AFCDALAEES ARAITANPIL  240
PSQAGSSTSQ MNFQFQPFNH EIPVTFSLKK EQQTGFNLRP EIPPWLLVGG GGGPGPGPGP  300
PQPQPIDLSS SIFQSSRFSD QDYTQSHQHH QQGFMNPNPS LSGPTSGAMA SPHISATALL  360
QKAAQMGATM SNKASTVSAV SSGPGPAMLM RPHQIHVSAT ATAAESVSNA TDFGLNLSSR  420
EDLPTGFFNS LASYGNKAAN PSAVITPVTI PLSTAPHPTP STLQDMMNSF SSVNPTGFEG  480
SNFEDPFSIL NPKNNNGSGN DDMTKDFLGL RPLSHSDIFN IAGLVNSTPN ETQSQNHKTW  540
QS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	171	232	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-35	171	232	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	137	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013659	0.0	BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004235590.1	0.0	protein indeterminate-domain 7 isoform X1
Refseq	XP_004235591.1	0.0	protein indeterminate-domain 7 isoform X1
Refseq	XP_010318499.1	0.0	protein indeterminate-domain 7 isoform X1
Refseq	XP_025886008.1	0.0	protein indeterminate-domain 7 isoform X1
Swissprot	Q8H1F5	1e-126	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3Q7FXF1	0.0	A0A3Q7FXF1_SOLLC; Uncharacterized protein
STRING	Solyc03g121660.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-114	C2H2 family protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]