PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g031450.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 339aa    MW: 38826 Da    PI: 4.8806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g031450.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.1e-062322691254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L++A+eYI+ L
  Sopim03g031450.0.1 232 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYINFL 269
                         677888999*******998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.15220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-9230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-11230284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-6230273No hitNo description
SMARTSM003530.0076231275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADEYFQDGV YGESLWINST KNIFSLSSST NSILDPIIGR YNFAWPNDDQ FLDMKNMSNN  60
NDDYYSSSDD SIVFQEFPKN HNLGINENSS SPDWNHSIND SMLQEKLNSR ENYPNHNELK  120
RNFSSIISED NSLIKPIMNQ DFTNYYSDLL QTLFANTDLH EEQPQQQSFN YPSSSINHRQ  180
KLKDFVPSLP KFDIEEIGES KLSSITKNNT NEQTNKRQRI ETPSSLPTFK VRKEKLGDRI  240
TALQQLVSPF GKTDTASVLQ EAIEYINFLH DQVNVFSNRY MKNGPPTQHQ QVKELQEGLK  300
QGLRSKGLCL VPISSTFPLA AETTMEFWTP TLMGTTVR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469561e-162AC246956.1 Solanum lycopersicum chromosome 3 clone MboI0020O17, complete sequence.
GenBankAC2470191e-162AC247019.1 Solanum lycopersicum chromosome 3 clone MboI0020O17, complete sequence.
GenBankHG9755151e-162HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234582.10.0transcription factor bHLH112-like
TrEMBLA0A3Q7FHS10.0A0A3Q7FHS1_SOLLC; Uncharacterized protein
STRINGSolyc03g031450.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-47bHLH family protein