PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g026070.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 808aa MW: 87936.6 Da PI: 6.5452 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 115 | 169 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k +++t++q++eLe++F+++++p++++r eL k+l L+ rqVk+WFqNrR+++k Sopim03g026070.0.1 115 KKYHRHTPYQIQELEAFFKESPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMK 169 78899***********************************************999 PP | |||||||
2 | START | 149.1 | 4.1e-47 | 322 | 544 | 1 | 205 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela + ++el+k+a+ ++p+W e +n +e+ ++f++ + ++ ea +a+g v ++ +lve+l+d++ +W + k Sopim03g026070.0.1 322 ELAFASMNELIKLADIGAPLWLGNFdgtaEVLNLEEYARSFPPCIGikpahFTAEATKATGTVMINSLTLVETLMDTS-RWMDIFScivgK 411 578999****************999899999************9999*******************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++vis+ g ql++ae+q++s lvp R + f+R+++q+ +g+wv vdvS+d q+ p + +++lpSg+++++++ng s Sopim03g026070.0.1 412 TSTINVISNSsggskdGNMQLIQAEFQVPSALVPvRRVKFLRFCKQHAEGVWVMVDVSIDAIQEGPV-PLDGSCRRLPSGCIVQELPNGCS 501 ********99999*****************************************************6.66666679*************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 kv+w+eh+++++++ h+++++ ++sgl +ga++w atlqrqce Sopim03g026070.0.1 502 KVIWIEHMEYDESVTHNYYHPYIRSGLGFGAQRWIATLQRQCE 544 ******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-18 | 101 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-21 | 109 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.86 | 111 | 171 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 113 | 175 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.29E-16 | 115 | 172 | No hit | No description |
Pfam | PF00046 | 2.3E-17 | 115 | 169 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 35.777 | 313 | 548 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.71E-26 | 315 | 544 | No hit | No description |
CDD | cd08875 | 8.06E-104 | 317 | 544 | No hit | No description |
SMART | SM00234 | 8.4E-30 | 322 | 545 | IPR002913 | START domain |
Pfam | PF01852 | 6.5E-40 | 323 | 544 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.67E-8 | 617 | 774 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence Send to blast |
MSFGGFIGSS SGGNGGGVSR LVGDTSYEAM PTATMAQSQL ITSSLSHSMF NSSPLSLALK 60 PKMEGSGDLS FDGMGRNSRD DEYESRSGTG SDNFDGVGSG DEIETHIGSS SKSAKKYHRH 120 TPYQIQELEA FFKESPHPDE KARLELGKRL TLESRQVKFW FQNRRTQMKT QMERHENSML 180 KQENDKLRIE NIAMKEAMRS PACPHCGGQA ILGEIHIEEH HLKIENARLR DEYSRICVVA 240 NKFLGRQVES VHGPMSAGMA NSGLELAVGR NGYGAMNSVD TALPMGLNFG NNFSSALPAI 300 SPRPALSMAG VDVSFDRNML MELAFASMNE LIKLADIGAP LWLGNFDGTA EVLNLEEYAR 360 SFPPCIGIKP AHFTAEATKA TGTVMINSLT LVETLMDTSR WMDIFSCIVG KTSTINVISN 420 SSGGSKDGNM QLIQAEFQVP SALVPVRRVK FLRFCKQHAE GVWVMVDVSI DAIQEGPVPL 480 DGSCRRLPSG CIVQELPNGC SKVIWIEHME YDESVTHNYY HPYIRSGLGF GAQRWIATLQ 540 RQCEFITVMS SPVPSGDNSV LSSSGRRSIA MLARRITRHF CNGVCATYYK WESIQLGTAE 600 ESKFIMRKGV GEPGDLNGMV LSASRTLWLP ITHQRLSDFL RNEQTRGQWD VLSQGGSVHR 660 IVHIAKGQDP GNSITLFRTT VANSDGSQNG LLTLQESCTD VSGSIIAYTS LNTGDMNGVM 720 NGGDSSCVTF LPSGFAMVPD CYENSNGVAG IGTLENGGKM NGCLLTMGYQ VLMSNPPTGN 780 LTMDSVNTVD SLITRTVHNI KLAFQCN* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234441.1 | 0.0 | homeobox-leucine zipper protein ROC5 isoform X1 | ||||
TrEMBL | A0A3Q7FF19 | 0.0 | A0A3Q7FF19_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g026070.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1626 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |