PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopim03g025870.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 280aa MW: 31876.7 Da PI: 6.7402

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g025870.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.1	1.2e-14	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l+++ ++G g+W++++ g+ R +k+c++rw +yl Sopim03g025870.0.1 16 KGLWSPDEDDRLKNYMIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 63 678*******************************************97 PP
2	Myb_DNA-binding	53.3	6.3e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+++++ +++++G++ W+ Ia+ ++ gRt++++k++w++yl Sopim03g025870.0.1 69 RGAFSLEEEDIILTLHAMFGNK-WSQIAQQLP-GRTDNEIKNHWHSYL 114 89******************.*****.**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.444	11	63	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-21	11	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-28	14	110	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-10	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-13	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	9.18E-9	19	63	No hit	No description
PROSITE profile	PS51294	26.905	64	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-25	67	118	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-16	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-15	69	114	IPR001005	SANT/Myb domain
CDD	cd00167	4.77E-11	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGCKLAAEKP KQKHKKGLWS PDEDDRLKNY MIKHGHGCWS SVPINAGLQR NGKSCRLRWI 60 NYLRPGLKRG AFSLEEEDII LTLHAMFGNK WSQIAQQLPG RTDNEIKNHW HSYLKKRVSK 120 MGENEGHTKP GKTDSSSPSL KKLTPQNSSL DSFEHIEGSL ADSDQSVYPR ETQKSNLPKV 180 LFAEWLSLDQ FNGQDFQNSG SFSFEPCKSN FVYNNNAELH DILMHSLPMN NDDGNGVNQE 240 VLHNDIFPPQ LKFEDTLSGN GFEEFMSREF NINDDVMYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-23	16	118	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234444.1	0.0	transcription factor LAF1-like
Swissprot	Q8LPH6	1e-53	MYB86_ARATH; Transcription factor MYB86
TrEMBL	A0A3Q7FEY0	0.0	A0A3Q7FEY0_SOLLC; Uncharacterized protein
STRING	Solyc03g025870.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	4e-61	myb domain protein 19