PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g091820.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 327aa    MW: 36542 Da    PI: 5.709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g091820.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-14153200355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h  +Er+RR+r+ + f +L +l+P++     kKl+Ka+iL  A+ YIk+L+
  Sopim02g091820.0.1 153 QDHVLAERKRRERLTQYFVTLSTLIPNL-----KKLDKASILGDAITYIKQLE 200
                         56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-12153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17154212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.84E-15155204No hitNo description
SuperFamilySSF474591.83E-17155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-16156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDISSATWWS EMDVMNMNEL QYIDQTFDDF AFSDNIQVSQ IGEIFEEKPA LCSSITQNTS  60
TSPPCSSPSV ISFSNSNSPS ATPTTTNAQN YFKNLNTSSL KTEVPSGTTI NFSSSNTSSD  120
SDYDDSKQLF QAMGFGAGQS KKMNYSRTPL QAQDHVLAER KRRERLTQYF VTLSTLIPNL  180
KKLDKASILG DAITYIKQLE EQVKRLDEEA NKQPVKRSRL HSNYDNFSTC NENSNKSVVP  240
EIDVRVSDGN VLIRVCCKKQ AGIIKEIFSQ VEMFQLTITS SSVIPFGYDT THITIVAQMD  300
HQLNMATEQV ANNIRLSIMK LINSHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233614.10.0transcription factor bHLH18-like
TrEMBLA0A3Q7FAR30.0A0A3Q7FAR3_SOLLC; Uncharacterized protein
STRINGSolyc02g091820.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-42bHLH family protein