PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g091800.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 348aa    MW: 39537.8 Da    PI: 7.8682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g091800.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13176221454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h ++Er+RR+++ ++f  L ++lP +     kK++Ka+iLe+A++++k+L
  Sopim02g091800.0.1 176 DHIIAERKRREKLSQRFVALSTILPGL-----KKVDKASILEQAIKHVKDL 221
                         6999***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15176235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10176221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-16177236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.57E-13177226No hitNo description
SMARTSM003536.8E-13178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDNSSLSQWF SRTEEGVFYS NRNNSIDDFT TQKSTISEDQ ETSELSITPD SARSNSRSYF  60
HKEISKCKAS KINFSLITPM ENFPIGSKRP ATDHPQQPKL NKISSSSHRF LSFNNNNNNT  120
DSVFPSHQGC KIEAMDDMYL CDSSDQMFYP YVKSNGCYDA KDKKGGKKIP SVELQDHIIA  180
ERKRREKLSQ RFVALSTILP GLKKVDKASI LEQAIKHVKD LKEKVQLLEE EKKSVMFVNK  240
YKVETEEYTS SEENNSGSDL PADIEVRFSD NNVLIRITCA RRNAFVLNIH SEIEKLHLTI  300
VQSSMMPFGK QAIDITLVAQ MEESFCMTLK DVAKHVRMVT GRLMTQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERKRRE
2181186RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233616.10.0transcription factor bHLH25
TrEMBLM1D0K10.0M1D0K1_SOLTU; Uncharacterized protein
STRINGSolyc02g091800.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136021316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-35bHLH family protein