PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g085160.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ZF-HD | ||||||||
Protein Properties | Length: 294aa MW: 33312.9 Da PI: 8.1131 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.4 | 1.5e-32 | 90 | 145 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrYkeClkNhAa+lGg+++DGCgEfmps gee t + lkCaAC+CHRnFHR+e+e+e Sopim02g085160.0.1 90 VRYKECLKNHAANLGGYVLDGCGEFMPS-GEEETLEYLKCAACDCHRNFHRKETEDE 145 89*************************9.8888********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-21 | 90 | 143 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.1E-30 | 90 | 142 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.5E-29 | 91 | 141 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.206 | 92 | 141 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-29 | 224 | 291 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.32E-18 | 225 | 290 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.3E-26 | 229 | 286 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEHRGQEKDM GLPNPNPMSY NPSQLNQQES SSSAANKFLT APNRTTNEHE NTIFSPNQTL 60 DQHNITQNSD PDPVRQLSTS SASERNITPV RYKECLKNHA ANLGGYVLDG CGEFMPSGEE 120 ETLEYLKCAA CDCHRNFHRK ETEDESQTPG VHRNNHRIPN QTPPSLPAVP TQQQHHHKYP 180 HSYPRGHMAP VMMSFGGNTG VAAESSSEDL NMFHGGQGVI QPCNFSASKK RFRTKFSQQQ 240 KDRMLEFAEK LGWRIQKQDE QEVHQFCNEV GVKRQVFKVW MHNSKQATKK KQN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-22 | 228 | 285 | 16 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215363 | 0.0 | AC215363.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0030A21, complete sequence. | |||
GenBank | AC215378 | 0.0 | AC215378.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0074A14, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232414.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 1e-66 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A3Q7F7J5 | 0.0 | A0A3Q7F7J5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g085160.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 5e-69 | homeobox protein 24 |