PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 196aa MW: 22413.9 Da PI: 6.3581

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g067760.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Sopim02g067760.0.1 14 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.4	1.4e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Sopim02g067760.0.1 67 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 110 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-24	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.919	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	9.73E-31	12	108	IPR009057	Homeodomain-like
SMART	SM00717	8.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.67E-10	16	61	No hit	No description
PROSITE profile	PS51294	25.808	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-16	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	9.61E-12	71	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0080086	Biological Process	stamen filament development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDKICNSQDV EVRKGPWTME EDLILINYIA NHGEGVWNSL AKSAGLKRTG KSCRLRWLNY 60 LRPDVRRGNI TPEEQLLIME LHAKWGNKWS KIAKHLPGRT DNEIKNYWRT RIQKHIKQGE 120 NMNGQGSSEQ NIDHQEGSSS QISSVGQADN IETYSPTSYN GNLDTNFQAS NFLNETNDNM 180 WSMEDIWSMQ LLNGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-25	11	116	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001351943.1	1e-144	R2R3-type MYB transcription factor 21
Swissprot	P81391	1e-103	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A3Q7FLV3	1e-142	A0A3Q7FLV3_SOLLC; Uncharacterized protein
STRING	Solyc02g067760.2.1	1e-143	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	5e-86	myb domain protein 21

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]