PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 336aa MW: 37397.7 Da PI: 5.9348

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g067340.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+q+G+g+W++ + + g++R+ k+c++rw +yl Sopim02g067340.0.1 14 KGPWTPEEDIMLVSYVQQHGPGNWRALPTKTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.3	1.2e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Sopim02g067340.0.1 67 RGNFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.18	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	6.5E-31	10	108	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.81E-10	16	61	No hit	No description
PROSITE profile	PS51294	19.982	66	116	IPR017930	Myb domain
SMART	SM00717	6.0E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-25	69	117	IPR009057	Homeodomain-like
CDD	cd00167	9.53E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGRVPCCDKM GVKKGPWTPE EDIMLVSYVQ QHGPGNWRAL PTKTGLRRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKMKRLD 120 QCHGSNDLFS LENGLTHLSS SNSSTSRGQW ERTLQADINM AKKALHNALS LENPTSSHNN 180 NIKQENTQVS STSTIYASST ENIARLLQGW IGSSTSSTNN SESSKTSSNN IATTDSSSCD 240 GTPNAETKGG MGLMEAFESL FGLESFESSS SDELSQTTTP EAIKIEIKKE ENEHDVEVPL 300 SIILENWLLD ENTLNIQPKN DLTTLISFDE TPQLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-26	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	LKKKMKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269\|PubMed:25305760, ECO:0000269\|PubMed:27577115}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269\|PubMed:25305760}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X99134	0.0	X99134.1 L.esculentum mRNA for myb-related transcription factor, THM6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234294.2	0.0	transcription factor
Swissprot	Q9SN78	1e-98	MYB94_ARATH; Transcription factor MYB94
TrEMBL	A0A3Q7F0T3	0.0	A0A3Q7F0T3_SOLLC; Uncharacterized protein
TrEMBL	Q40175	0.0	Q40175_SOLLC; Transcription factor
STRING	Solyc02g067340.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	2e-96	myb domain protein 94

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495] Lee SB,Kim HU,Suh MC MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis. Plant Cell Physiol., 2016. 57(11): p. 2300-2311 [PMID:27577115]