PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g061900.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 34602.8 Da PI: 5.0922 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 46.2 | 1.4e-14 | 7 | 117 | 11 | 127 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkge 98 dee + +yL k v+g +e+ + i+ vd+y +P++L ++ +++++ + F++ +kk+ +gk+ nr + g Wk + k+v+++kg Sopim02g061900.0.1 7 DEEQLLRYLLKFVTGMLVEC-DQIRFVDLYGKeKPSQLFET--TTTDRHHVFTQLKKKKGNGKNFNRgiVGGGGSWKGIDNGKPVYNQKGL 94 777778***********999.88******97648****633..23457899****************74445899**************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 ++g kkt+ f ++ + W+m+eyr Sopim02g061900.0.1 95 KIGFKKTFRFD--EE----NHVWIMKEYR 117 **********7..22....458******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.897 | 1 | 146 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-17 | 7 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-6 | 8 | 117 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGMMNFDEEQ LLRYLLKFVT GMLVECDQIR FVDLYGKEKP SQLFETTTTD RHHVFTQLKK 60 KKGNGKNFNR GIVGGGGSWK GIDNGKPVYN QKGLKIGFKK TFRFDEENHV WIMKEYRPSD 120 NILKALRLRG QIRHEEEFAV CSITRSVYSS KVIIPSDNNV ENFIDSVLIS SSQCQEAQNQ 180 FQELGQSFAQ YQFQDLEQLS STNGIPSDGS NSILNGNVGP VTLVFKESNV SAAKEDECSV 240 HQQTPSVECS VYDIATYHKE LDAYAAFQLK SMVPNIPQQQ EDDEPDSIPL FHEDFNIDYT 300 HLLT* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246743 | 0.0 | AC246743.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158228.1 | 1e-168 | PREDICTED: uncharacterized protein LOC107057785 | ||||
TrEMBL | A0A3Q7FJ66 | 0.0 | A0A3Q7FJ66_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g061900.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |