PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g107960.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 300aa    MW: 33366.7 Da    PI: 7.9089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g107960.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.3e-1197145355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h+  Er RR+++++ fe+L  l+P++      K +K+ i+ +A ++I++Lq
  Sopim01g107960.0.1  97 EVHKWTERERRKKMRTLFETLHALVPNL----PVKADKSKIVYEAANHIRNLQ 145
                         568899*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.70E-1192146No hitNo description
SuperFamilySSF474593.01E-1393163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.23694144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1297163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-897145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-4102150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.4E-4217277No hitNo description
CDDcd048735.59E-5221263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNEGGENNHD HLCDDMWSHL DWNDHQVESG EIEGNKLLDP TGSDTCQPLT FINEVVDVSV  60
NVAKKRSSAN RKKKGKKIAE PNSSVDGAEV RRASKHEVHK WTERERRKKM RTLFETLHAL  120
VPNLPVKADK SKIVYEAANH IRNLQNTFNK LESQKLERLE ENNIMLVGSQ KVGNSWEKYG  180
GDQGSICNSK AITPANHGPT GFMTWSSPNV VLNVAGEDAH ISVCCPKKPG LFTTICYVLE  240
KHKIDTVSAK ISSDQFRSMF MIQAHAKGGS GVAQFSEGFT VEDMYKQAAN EIMLMTTPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16976NRKKKGKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082532.20.0transcription factor bHLH95-like
TrEMBLK4B3130.0K4B313_SOLLC; Uncharacterized protein
STRINGSolyc01g107960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-43bHLH family protein