PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g107950.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 306aa MW: 33951.5 Da PI: 6.9902 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2.1e-10 | 103 | 146 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ fe+L l+P++ K +K++i+ +Av++I +Lq Sopim01g107950.0.1 103 TERERRKKMRTLFETLHALVPNL----PAKADKSTIVYEAVNHIVKLQ 146 6*********************6....39***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-14 | 92 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-10 | 93 | 147 | No hit | No description |
PROSITE profile | PS50888 | 13.027 | 95 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 99 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-4 | 103 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-8 | 103 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.3E-5 | 224 | 286 | No hit | No description |
PROSITE profile | PS51671 | 8.543 | 226 | 305 | IPR002912 | ACT domain |
CDD | cd04873 | 5.91E-4 | 227 | 258 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MNIDGENNHG LPWETNDFWS YLNDNQVGSE ETFDGDKVPG PTKSDICQQL TIVNEVVEVT 60 PAVGKKRSPP NRKSNGKGIA EPNLDVGGAE GKRESEHEIH IWTERERRKK MRTLFETLHA 120 LVPNLPAKAD KSTIVYEAVN HIVKLQNTFK KLKSQKLEKL EEYNIGLAGS QKVYNSWEKY 180 VVDQGSTCNS TAITPTNHGA SPLIPTGFMT WSSPNVILNV CGEDAHISVC CPKKSGLFTI 240 ICYVLEKHKI DIVSAQISCD QFRSMFMIQA HAKSGRDVAQ FSEAFTVEER LKQAATEIMA 300 LATSK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231394.2 | 0.0 | transcription factor bHLH95-like | ||||
TrEMBL | A0A3Q7ESB3 | 0.0 | A0A3Q7ESB3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g107950.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-19 | bHLH family protein |