PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g097850.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20073.9 Da    PI: 7.3534
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g097850.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF337.7e-1124631049
                        HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        + +fskRr  + KKA+ L   Cd+++ +i+fs++g+ y +
  Sopim01g097850.0.1 24 YASFSKRRLSLYKKASDLVFECDVDIGMIYFSPKGNPYSF 63
                        679********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.969767IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-13766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-18878IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-9929IPR002100Transcription factor, MADS-box
PfamPF003191.0E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MENKKSRGRQ KIPMKKIEKL GDLYASFSKR RLSLYKKASD LVFECDVDIG MIYFSPKGNP  60
YSFFHPNVNT VVSRFQNPDM EFSESDLLIT TDNQVKVKEL KSRLDELDII EDIAIATKKS  120
YDEVIKARKR GWWESIEQLN EPQVTKFEAW MDTIIFNMQN RLNEMENGAS SS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164373.11e-104PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7EMD61e-124A0A3Q7EMD6_SOLLC; Uncharacterized protein
STRINGSolyc01g097850.1.11e-125(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-22AGAMOUS-like 62