PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g020170.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 305aa    MW: 34387.9 Da    PI: 7.5585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g020170.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-07102144854
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          Er RR+++++ fe+L  l+P++   p  K + + i+ +Av+ I++L
  Sopim01g020170.0.1 102 TERERRKKMRTQFENLHALVPNL---P-AKADMSKIVYEAVNRIRKL 144
                         6*********************7...3.7888888999999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.30E-689146No hitNo description
SuperFamilySSF474594.84E-1092156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.71994144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-999160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-5102144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.9E-5222284No hitNo description
SuperFamilySSF550212.01E-5223284No hitNo description
CDDcd048731.98E-4226268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNEDGENNHD HLCDDIWSYL DWNDHQVESG ETEGNKLLDP TGSDTCEPFT VINEVVEVSV  60
NVAKKRSSAN RKKNGKEIAE PNSGVYGAEV RKTSKHEVRK WTERERRKKM RTQFENLHAL  120
VPNLPAKADM SKIVYEAVNR IRKLKNTFKK LESQKLKSLE EYNIRLTGSQ KVDNSWEKYV  180
GDQGSTCNSI AIIPTNHGAS PLIPTSFMTW SSPNVILNVS GEDAHISVCC PKKPRLFTTI  240
CYVLEKHKID IVSSQISSDQ FRSMFMIQAH AKDGSGVAQF SEAFTVEDMY KQAANEIMLM  300
TTPK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067769.10.0transcription factor bHLH95-like
TrEMBLK4AUZ90.0K4AUZ9_SOLLC; Uncharacterized protein
STRINGSolyc01g020170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-15bHLH family protein