PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 175aa MW: 19833.5 Da PI: 10.233

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g014720.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1.1e-18	104	154	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+WvAeIrd ++ +kr +lg+f ta+eAa a+++a+ +++g Sopim01g014720.0.1 104 KKYRGVRQRK-WGSWVAEIRDIRI---NKRRWLGSFATAYEAALAYDKAAIEIKG 154 59*****9.******544...4*********************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.92E-28	104	160	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.2E-25	105	160	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.678	105	162	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-17	105	161	IPR016177	DNA-binding domain
SMART	SM00380	2.3E-31	105	168	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-12	105	154	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-8	106	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-8	128	144	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MASKDELHEN EVVKNQSKDA RGNKTNLMGD CSVVLQRVVR IYITDNDATD SSSDEEENHQ 60 GEKSKRQKRI CKEIIIKNGK TNVTSKMVSS KEKNVTKTHQ ENVKKYRGVR QRKWGSWVAE 120 IRDIRINKRR WLGSFATAYE AALAYDKAAI EIKGPNALTN ILKPPPKESD PINH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-15	104	161	4	62	ATERF1
3gcc_A	3e-15	104	161	4	62	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC245829	0.0	AC245829.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-4l7 map 1, complete sequence.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025885736.1	1e-125	ethylene-responsive transcription factor ERF069-like
Swissprot	Q9SUE3	5e-32	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	A0A097F7I6	1e-119	A0A097F7I6_9SOLA; CRF7
STRING	Solyc01g014720.1.1	1e-124	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	3e-25	cytokinin response factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]