PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim00g050430.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 344aa    MW: 38441.3 Da    PI: 4.4263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim00g050430.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11177220654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Sopim00g050430.0.1 177 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 220
                         589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-16174239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9177220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-15178232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.79E-5178224No hitNo description
CDDcd048733.26E-5269310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEYYNENGFL EELLSLRSES WDTTNVVPME MSHDFYSNVL NYDNIPLPCT TTSNSFEGYS  60
CNLPFDQQNL INCGTSFCSP FCDELSPPSS FPSQDDFSSI LDDEVGNYSF QNLEMGNNSC  120
NNDNNSNIVI PCKLEENQVC EGAGGRVGGA SSFNIGFCPE IRKSKSKKMD GQPSKNLMAE  180
RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL GDTIDYMKEL LEKINNLQEE MELGPNQLSL  240
MSIFKDVKPN EMLVRNSPKF DVERRSVDTK VEICCAGKPG LLLSTVTTLE ALGLEIQQCV  300
ISSFSDFAMQ ASCSEEMEQR GVVSSEDIKQ ALFRNAGYGG RCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179186ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316504.10.0NO FLOWERING IN SHORT DAY-like transcription factor
SwissprotQ9LSL12e-86BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A494G9H40.0A0A494G9H4_SOLLC; Uncharacterized protein
STRINGSolyc00g050430.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-88beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]