PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g029630.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 395aa    MW: 43757.2 Da    PI: 8.6902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g029630.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.21.2e-141150342
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      ien+ +r+ ++ +R++g++K A+ELS+LC++e a+ ++s+
  Sopen12g029630.1 11 IENEAKRKASYKQRLKGLFKTANELSTLCGVEMAITVYSP 50
                      9*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.699149IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-8160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-17184IPR002100Transcription factor, MADS-box
CDDcd002664.25E-20384No hitNo description
PfamPF003197.2E-151151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MPRTKVKFAL IENEAKRKAS YKQRLKGLFK TANELSTLCG VEMAITVYSP YQIQPILFPN  60
NANAFNTFKR FSELSVLDQS KHMMTGEEFT KRRTEKLEKQ LHKVRKENRV NECTNKMYRV  120
LKGIDIPADM NPYDLNDLSF VIKQNLKQVC EMMKAKIDGE GSTLNAHQPM VPHGPNSEEP  180
RAPLLDIIRA PVSIVPLVAP STAIGAANFE GLSTDLLVPV VDPISMVPPA DPSMVPQADP  240
LMVLQADPLM VPSAAPAQMP KPLSNLMDPL VKSSRSSPPP FSPFSLENFP EMFVQSYPPL  300
PQEMAFRRAP RMAPPTKMAS PIPSTIITPP MACSEPSMAS SSAPVQMLEP MCHMVVPSRT  360
PQPVPFVDPS RFPPLPLSPS SLDMFPPMFP QLYPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060151.10.0agamous-like MADS-box protein AGL80
RefseqXP_015060152.10.0agamous-like MADS-box protein AGL80
RefseqXP_027769304.10.0agamous-like MADS-box protein AGL80
RefseqXP_027769305.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A0V0HGT11e-137A0A0V0HGT1_SOLCH; Putative agamous-like MADS-box protein AGL80-like (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.18e-27AGAMOUS-like 38