PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g029100.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 641aa    MW: 71128.4 Da    PI: 7.0458
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g029100.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.81.7e-2970153186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW++qe+laL+++r+em+  +++++lk+plWeevs+k++e g++rs+k+Ckek+en+ k+++++k+g+ ++   + +t+++fdql+
  Sopen12g029100.1  70 RWPRQETLALLKIRSEMDVVFKDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLQ 153
                       8********************************************************************96..66678******98 PP
2trihelix101.56.6e-32448533187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k+e+ aLi +r+ ++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea
  Sopen12g029100.1 448 RWPKEEIEALISLRTCLDLKYQENGPKGPLWEEISSGMRKIGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 533
                       8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.14363127IPR017877Myb-like domain
SMARTSM007170.00267129IPR001005SANT/Myb domain
CDDcd122037.34E-2469134No hitNo description
PfamPF138374.8E-1969155No hitNo description
SMARTSM007170.0024445507IPR001005SANT/Myb domain
CDDcd122036.02E-27447512No hitNo description
Gene3DG3DSA:1.10.10.609.3E-4447504IPR009057Homeodomain-like
PROSITE profilePS500907.399447505IPR017877Myb-like domain
PfamPF138373.3E-21447534No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MLGVSSSLIA SSTITAGAAG DGAAISAAPS QLAPPPQEAP ESGGSSEGGG GGGDLSIGGE  60
DGERNSGGNR WPRQETLALL KIRSEMDVVF KDSSLKGPLW EEVSRKLAEL GYHRSAKKCK  120
EKFENVYKYH RRTKDGRASK ADGKTYRFFD QLQALENNPS SHSNIPPPPL AATPITMAMP  180
MRSGNNSANP PTPTPQNHNH FFSVSQKSVV TGAAQPAVMT APALPLSQVA LQPIGNNLNQ  240
MNTTTKTSFL SNSTSSSSST SSDEDIQRRQ MKKRKWKEFF ESLMKDVIEK QEELQKKFLE  300
TLEKRERDRL MREETWRVQE MARLNREHDL LVQERSMAAA KDATIIAFLQ KITEQQNTQT  360
PNSTNNTSPF PIAQMQLKLS EKPFSTQSQP QSQPQPSAIA VSLPMTIHTP TPAPPPQTLT  420
LPVVSSKSLE PPKSDNGGEN FSPASSSRWP KEEIEALISL RTCLDLKYQE NGPKGPLWEE  480
ISSGMRKIGY NRNAKRCKEK WENINKYFKK VKESNKRRPE DSKTCPYFHQ LEALYKEKAK  540
LEAVTHNTAF GLTPENTPPP PIMAQPEQQW PIPQNQLHQQ QQQQNRDHHH DNESDSMDHD  600
LEEDEDEEDE GNGYEIITNK QQSSSMAATT VTTTTTSAAA V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266274QRRQMKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061369.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-139TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3Q7JB430.0A0A3Q7JB43_SOLLC; Uncharacterized protein
STRINGSolyc12g056510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-80Trihelix family protein