PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g012630.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 195aa    MW: 22114.2 Da    PI: 6.1208
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g012630.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.55.4e-5528123297
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++ lGfedyv plk+yl+kyrele
  Sopen12g012630.1  28 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITILGFEDYVLPLKQYLNKYRELE 120
                       89******************************************************************************************* PP

             NF-YB  95 gek 97 
                       gek
  Sopen12g012630.1 121 GEK 123
                       996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.0E-5127137IPR009072Histone-fold
SuperFamilySSF471132.64E-3930136IPR009072Histone-fold
PfamPF008083.4E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-186179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-188098No hitNo description
PRINTSPR006151.9E-1899117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEDERGGNCA ESSSSTLMPM PMPMPMNKEQ DRFLPIANVG RIMKKVIPGN GKISKDAKET  60
VQECVSEFIS FVTGEASDKC QREKRKTING DDIIWAITIL GFEDYVLPLK QYLNKYRELE  120
GEKLNVPKHV NQQQQQHAAD QIKPNFSYNT TTTVYSPTPL LPQTSFVPTD QPFPLPFSPN  180
SQLPKQEHLD SMGHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4328118292Transcription factor HapC (Eurofung)
4g92_B4e-4328118292Transcription factor HapC (Eurofung)
5g49_A4e-4328118797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060873.21e-146nuclear transcription factor Y subunit B-7
SwissprotQ9SIT91e-67NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLK4DDT51e-134K4DDT5_SOLLC; Uncharacterized protein
STRINGSolyc12g027650.1.11e-135(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-68nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]