PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g035820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 365aa    MW: 39308.7 Da    PI: 9.5431
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g035820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.21.6e-3784143362
            zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       e+++kcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+ss
  Sopen10g035820.1  84 EATQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSS 143
                       56789****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014477.85E-54655No hitNo description
ProDomPD0074786.0E-3267136IPR003851Zinc finger, Dof-type
PfamPF027019.2E-3286141IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.99487141IPR003851Zinc finger, Dof-type
PROSITE patternPS01361089125IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVFSSISAYL DPSNWQQQVG YSIPNPQLPS GLSQPTPPRP LASTTPPPPP PPPPPQPHHV  60
GGGGSIRPGS MADRARLANI PMSEATQKCP RCESTNTKFC YFNNYSLSQP RHFCKTCRRY  120
WTRGGALRSV PVGGGCRRNK RSSTSNSSTS AKSSNNNTKS QGSSQTTNSG STSNNNSTFS  180
SPSAAASLLG LMNPPIHPLR FMSPLGQLTD QHFTPNEMNY TSISSSSPAP IVMGTNENMN  240
FQLGMGSNLE QWRLHQQLVN QFPYNLYGGL DSSPASGSGS ASASGLYPFH PAHYDASGGG  300
VISQIRPKVL NPMLTQLALM KMEDDQDHVA SMPRQFLGHE NWTSNANWNE LSASFSSSST  360
SNNVL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056384.10.0dof zinc finger protein DOF2.4-like
TrEMBLA0A3Q7IND40.0A0A3Q7IND4_SOLLC; Uncharacterized protein
STRINGSolyc10g086440.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.16e-43DNA binding with one finger 2.4