PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g035030.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 416aa MW: 47106.7 Da PI: 7.7239

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g035030.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.5e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Sopen10g035030.1 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.14E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-24	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-24	144	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MYHHHHQDKS MHPSTRMSVP ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAVAAAGV 120 ERISENSATC MSNPSMVPQP NKNIQISEAI QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY 180 LQSVLEKAQE TLGRQNMETV GLEAVKVQLS EFVSKASNQC LNSPFPDIKE LSGFHSQQTQ 240 ATQPTDRSID SCLTSRDGSL RDNTMHDNQI GLRPFGFTPS IERKDIENDT RLQQTELRWC 300 DNLKENRRLF SPMNEGREKT FTRETNCNNL SMSIGLQDEK LNGSMNHSDG NFNGTERDVK 360 LFHQVTNRSE SVPQRHKSSQ EYKLSYFEPK LDLNMHDETD AASSCKQFDL NGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MYHHHHQDKS MHPSTRMSVP ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAVAAAGV  120
ERISENSATC MSNPSMVPQP NKNIQISEAI QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY  180
LQSVLEKAQE TLGRQNMETV GLEAVKVQLS EFVSKASNQC LNSPFPDIKE LSGFHSQQTQ  240
ATQPTDRSID SCLTSRDGSL RDNTMHDNQI GLRPFGFTPS IERKDIENDT RLQQTELRWC  300
DNLKENRRLF SPMNEGREKT FTRETNCNNL SMSIGLQDEK LNGSMNHSDG NFNGTERDVK  360
LFHQVTNRSE SVPQRHKSSQ EYKLSYFEPK LDLNMHDETD AASSCKQFDL NGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015089281.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_015089282.1	0.0	myb-related protein 2-like isoform X1
Swissprot	Q9FK47	1e-132	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A3Q7IMN9	0.0	A0A3Q7IMN9_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400021653	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-131	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]