PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g032920.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 284aa MW: 33675.8 Da PI: 5.9355

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g032920.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.1	2.3e-46	19	144	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p+G+rF P+d+el+++yL k+++++ l+ + ikev++yk+ P dL ++ +ekewyfF++r++ky++g+r+nra+ +gyWkatg dk+++ Sopen10g032920.1 19 PVGYRFCPRDDELITHYLLKRIRNEVLPH-DKIKEVNLYKYSPYDLAeIYAALGEKEWYFFTPRNRKYPNGHRPNRAAGRGYWKATGADKPII 110 89**********************999.88**********8345556999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +vg +k Lvfy+g+ pkg kt+W+mheyr+ Sopen10g032920.1 111 H-NNVTVGFRKALVFYEGKPPKGLKTNWIMHEYRV 144 .999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-55	14	169	IPR003441	NAC domain
PROSITE profile	PS51005	53.355	18	170	IPR003441	NAC domain
Pfam	PF02365	1.5E-24	19	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MAFINSNFEN PDPNDFVFPV GYRFCPRDDE LITHYLLKRI RNEVLPHDKI KEVNLYKYSP 60 YDLAEIYAAL GEKEWYFFTP RNRKYPNGHR PNRAAGRGYW KATGADKPII HNNVTVGFRK 120 ALVFYEGKPP KGLKTNWIMH EYRVNESRRI KMHAADMKLD DWVLCMIYKR CTKSKDSKKL 180 KENEQEDELE DASKINSVEN YEWTMDSCLI EFAKRQFEDP YQYLNMSENV SIDCYNNTFP 240 IIDFNDLYQV PLNNLYQNPY YNTGTTESQN VLDDDSLDDK STHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-57	18	168	15	166	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015055089.2	0.0	NAC transcription factor 32-like
Swissprot	A0SPJ6	5e-62	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A3Q7ILV4	0.0	A0A3Q7ILV4_SOLLC; Uncharacterized protein
STRING	Solyc10g083450.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	7e-61	NAC domain containing protein 32

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]