PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g028120.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 304aa MW: 34331.5 Da PI: 7.0067

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g028120.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3e-32	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWtp+LH+rFv+ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ+YR+ Sopen10g028120.1 62 VRLRWTPDLHRRFVHAVERLGGHDRATPKLVLQLMNIKGLNIAHVKSHLQMYRS 115 59***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.714	58	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-30	58	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-15	63	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-22	63	117	IPR006447	Myb domain, plants
Pfam	PF00249	9.3E-9	63	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MMEDSGDTEF SKTSPNSNQN EEEDENVTST KLHKDGGSSS ISTIEESEKK FSVRPYVRSK 60 MVRLRWTPDL HRRFVHAVER LGGHDRATPK LVLQLMNIKG LNIAHVKSHL QMYRSKKIDD 120 PSQGITNHHK LCMEGGDPYI YNLSQLPMLS SFKQRFNPTF RYGDVSSRNC QDHDLMHSSI 180 MGQSTIDKAR IGLYTTLNEG IFGSNPIDKL TPLFQIAEKS QARILSTPLK RKAMDCDLID 240 LNLSLGVKQK HHSHDNDDDD DDDDGSSLTL SLSSQRSPSR LKEDVNYAII ENARRGASTL 300 DLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015055277.1	0.0	uncharacterized protein LOC107001830
TrEMBL	A0A3Q7IJK0	0.0	A0A3Q7IJK0_SOLLC; Uncharacterized protein
STRING	Solyc10g076460.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	7e-50	G2-like family protein