PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g027510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 908aa MW: 100176 Da PI: 6.7324 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 1.9e-18 | 322 | 422 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e Sopen10g027510.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PE 412 99**************************555567778***************9989999999***9.********************876.88 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++++ Sopen10g027510.1 413 GKLLMGFRKA 422 8888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-29 | 314 | 423 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 319 | 421 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.14E-22 | 320 | 421 | No hit | No description |
SMART | SM01019 | 1.9E-20 | 322 | 423 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 322 | 423 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-16 | 322 | 422 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.202 | 586 | 636 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.0E-12 | 591 | 633 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 908 aa Download sequence Send to blast |
MESKICMNGL CGTASSIEWK KGWPLRSGEF ATLCDKCGNA YEQLLFCDLF HSEDTGWREC 60 ISCGKRLHCG CIASSSLLEL LDSGGINCIS CVRSCQQHAT PNHEKPKAFG TSISNSVGET 120 ASTSLGSQIN GSEPNKRDGS DSIDPALLLL HQNDNTNSPI GQIKMEETFH PAGESGSTFS 180 SNLCQASAES SKNAKLDSYN GYKGVVEIHG STVQTNLSIA LSAPSPNSKL FPTTLDEGDL 240 NKTISSLQQG SRSRNLLPKP PKSASALGPE MNAGIISQIR VARPPVEGRI KNQLLPRYWP 300 RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR 360 IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR 420 KASTVKITQE NRLSAIPKSV FSAEPTSFSA MPENLPLMSG YSGLLQSFKG SREPSVNLSS 480 KHFNGGDFSW YLTEKNGGRN ADGAFSPSMP VSERKRSRNI GSKSKRLLID AHEALELKLS 540 WEELQDMLRP PLSVQPTTVT IEDQEFEEYE QPPVLGKRSI FTVRLSGEQE QWAQCDNCFK 600 WRKLPADYLL PPQWTCQDNI SDHSRSSCSV PDDLTPRELE TLLKMDKDFK KQRSASGLRI 660 TQAHDSSDLD SQANGISIAG DPREPGPASV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP 720 TCTCNVCMTV KRRFKTLMMR KKKRQSEREA ELGQMNQLMW SSREETEVDS FSRQVKPEVD 780 PSDKERSGSE TLARGHSSNQ LQKLPEISKS QLDLNCHPNR EDTGSSHISM MSLLQQACLP 840 LETYLRQNGL TSLVSEQQGS SGSQGLPQDT RESDLRVQED LCLASTAQEQ EMDVPKENSE 900 PDQSGKDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 1e-67 | 300 | 423 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 1e-67 | 300 | 423 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 1e-67 | 300 | 423 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 1e-67 | 300 | 423 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 1e-67 | 300 | 423 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 1e-67 | 300 | 423 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 1e-67 | 300 | 423 | 2 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 730 | 741 | KRRFKTLMMRKK |
2 | 730 | 743 | KRRFKTLMMRKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055848.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A2G2YL69 | 0.0 | A0A2G2YL69_CAPAN; Uncharacterized protein | ||||
STRING | Solyc10g075030.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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