PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g031520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HSF | ||||||||
Protein Properties | Length: 356aa MW: 41742.8 Da PI: 5.5825 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.5 | 3e-35 | 38 | 130 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+ye ++d+++++++sws +nsf+v+d+++fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+h+ F +g+++ll Sopen09g031520.1 38 FLTKTYEFVDDQNTNSVVSWSIGNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDH---------WEFAHEGFLRGQRHLL 121 9********************999******************************************99.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i+r+k++ Sopen09g031520.1 122 KTIRRRKTS 130 ******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-37 | 31 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.26E-33 | 33 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.7E-57 | 34 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.2E-30 | 38 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-18 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-18 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-18 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MDPNFGVPIK EEFPRSNEPT MWIPQPMEGL HENGPPPFLT KTYEFVDDQN TNSVVSWSIG 60 NNSFIVWDPQ TFAMNLLPRY FKHSNFSSFV RQLNTYGFRK VNPDHWEFAH EGFLRGQRHL 120 LKTIRRRKTS NFHPGQGSNQ GIDSYIELGK LEIDGQIDRL RREKKDLMME LVELKQHQQT 180 TKSHIKSMEE KLKRTEAKQQ QMMNFLAKAM QNPRFLEQMM QQKERRKELE EEIRNKRRRQ 240 IDHHQGPSNI VGELDHSFNI SDGNFNIKME PHEYYYGEMN GFDNLELETS LGMSMQGGPS 300 ENTINFEDKS IDHEGFWEGL LNESIEDEIN LLEGENEEDH VDVLAHQLGF LGSTPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-25 | 36 | 130 | 18 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 238 | RRKELEEEIRNKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087367.1 | 0.0 | heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-117 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A3Q7I8A8 | 0.0 | A0A3Q7I8A8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g082670.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-109 | heat shock transcription factor A6B |