PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g005390.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 411aa MW: 43587.6 Da PI: 9.2807

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g005390.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.2	1.6e-37	81	140	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnyslsqPr+fCkaC+ryWt+GGalr vPvGgg+r+nk+s+ Sopen09g005390.1 81 ETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACKRYWTRGGALRSVPVGGGCRRNKRSN 140 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-35	64	133	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	83	138	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.245	84	138	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	86	122	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MNFSSIPAYL DPANWQQQSG STIQNHHHHQ QQLTSAPPPP VLPPGPPVVA PLQPHGGGGA 60 GSIRPGSMAD RARMANIPMP ETALKCPRCD STNTKFCYFN NYSLSQPRHF CKACKRYWTR 120 GGALRSVPVG GGCRRNKRSN NNNKNSNNNN YNNNSSKSPA SSTSTDGRQG TNNSGSSTTI 180 SSHSNSFSGP TSAASLLGLM SPQIPPLRFM SPLGQFSSDH HHHHHFTPSN HMNLNFSTSS 240 CGNILGGTTE GMMVSNNNNL LGAGTGAEAG AGAGAGVGGH VASLLSSGNL EHWRMQQQFP 300 NFLGGFDPSN SPSSYPFQGG VHEAVQYLGG ESTSQISRPK ISTSMLNQMA SVKMEDNNNS 360 NNNNNNSNQD QSALSRQLLG IQGNNENWNT SASAWSDLSA SFSSSSTSNA L

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MNFSSIPAYL DPANWQQQSG STIQNHHHHQ QQLTSAPPPP VLPPGPPVVA PLQPHGGGGA  60
GSIRPGSMAD RARMANIPMP ETALKCPRCD STNTKFCYFN NYSLSQPRHF CKACKRYWTR  120
GGALRSVPVG GGCRRNKRSN NNNKNSNNNN YNNNSSKSPA SSTSTDGRQG TNNSGSSTTI  180
SSHSNSFSGP TSAASLLGLM SPQIPPLRFM SPLGQFSSDH HHHHHFTPSN HMNLNFSTSS  240
CGNILGGTTE GMMVSNNNNL LGAGTGAEAG AGAGAGVGGH VASLLSSGNL EHWRMQQQFP  300
NFLGGFDPSN SPSSYPFQGG VHEAVQYLGG ESTSQISRPK ISTSMLNQMA SVKMEDNNNS  360
NNNNNNSNQD QSALSRQLLG IQGNNENWNT SASAWSDLSA SFSSSSTSNA L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015086127.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A3Q7HZW1	0.0	A0A3Q7HZW1_SOLLC; Uncharacterized protein
STRING	Solyc09g010680.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	9e-45	Dof family protein