PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g002790.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 528aa    MW: 59475.6 Da    PI: 6.4153
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g002790.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-10413460448
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       WT  E  +l+d+v+q+G g+W+ I +       +Rt+ ++k++w+++l
  Sopen09g002790.2 413 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssVHRTPVDLKDKWRNLL 460
                       ***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.444405464IPR017930Myb domain
SuperFamilySSF466891.58E-16407468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-13407467IPR009057Homeodomain-like
SMARTSM007171.2E-11409462IPR001005SANT/Myb domain
CDDcd116608.36E-20413461No hitNo description
PfamPF002491.1E-7413460IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MITLPHELAF WVENSAYRSG FASLGVWFDE SETRDDHASI SGVLCFDEKR VLKGMERKGA  60
LYNIGSSIAS KRENEINQDV LDLKRSQFEA GKIQAQNDLS TPCEDYLLDI EFAESITNLD  120
YGSSRGLLDP ILESQIPLSS CDGTDTCGMP YSAGLVVQES QSQNAMFGLT NSELHDLSRD  180
KCESQMLVEY NAVKFPTAFN PGDISNVDDV AGFFAEAAAS EKMNDSMIDH SALTSKGISF  240
MSTATQNERQ DVNCESFDMH ESSEISPPVT SEAINIDNPV TQKRLRKPTR RYIDESSDLN  300
AKRRKKRAEV STSAPESKNK LLKVRCQKKP RGESMEMVLF SEESSYEAIQ VPFASLVNEE  360
CDDWDASEAI QVFKPHKEEP HKEATTVVNH EDDDVTPKKL VQDGVRRKHH RLWTVSEVRK  420
LIDGVAQYGV GRWSHIKKLY FSSSVHRTPV DLKDKWRNLL KATYLQKQSK STEKGKHNLS  480
WRPLPKSVLH RVSELANMHP YPRNRRCKSS RSPCASSSPE HSNSSNIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088498.10.0uncharacterized protein LOC107031587 isoform X2
RefseqXP_027775486.10.0uncharacterized protein LOC107031587 isoform X1
TrEMBLA0A3Q7HWM80.0A0A3Q7HWM8_SOLLC; Uncharacterized protein
STRINGSolyc09g007990.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91551723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-26TRF-like 6