PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g023740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 310aa    MW: 35686.2 Da    PI: 4.5017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g023740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08191237455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       a +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +YI+ Lq
  Sopen08g023740.1 191 AQSMAARQRRKKISDKTQELGKLIPGgH------RMNTAEMLQATYKYIRLLQ 237
                       567889*******************955......9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-11184244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-10185239No hitNo description
Gene3DG3DSA:4.10.280.105.6E-11186240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.894187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6191237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASVSYYSAS KLEPNVQEFN SEEMMTMQQL LFDFNYDVEQ NFSDENQDCY FDPDEFILPI  60
EMNNSCCFMP EYSVFEKQPK DNNSCFIPEY SVFESFPKRQ KIFQDDFFPN PNSNTITPST  120
QNSSFMPEYS VFEKQQKLFQ DNFHEGFVPN PPMFEDFALP EIPMPVFSSN NAAGVVAKKG  180
CSSNNEKKMS AQSMAARQRR KKISDKTQEL GKLIPGGHRM NTAEMLQATY KYIRLLQAQA  240
GLLAFMGSYQ ESFETPNLQK IVGSSLVQEK LYSSEHCLVP KVFLEALENN QEFQNSQILE  300
EIKTLMKEGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084372.10.0transcription factor bHLH52-like
TrEMBLA0A3Q7HSY40.0A0A3Q7HSY4_SOLLC; Uncharacterized protein
STRINGSolyc08g075110.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.18e-25bHLH family protein