PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g004260.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 685aa MW: 76423.9 Da PI: 5.7213 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.4e-23 | 133 | 233 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvlt sd++++g +++ +k+a+e+ + + ++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++vF ++ Sopen08g004260.2 133 FCKVLTASDTSTHGGFSILRKHANEClppldmtQ--ATPAQELVAKDLHGFEWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVTGDSFVFLRS- 222 99****************************9544..444559************************************************54. PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 ++e +++++r Sopen08g004260.2 223 -GKGEVRIGIRR 233 .68888999987 PP | |||||||
2 | Auxin_resp | 103.7 | 2.3e-34 | 259 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F v+Y+Pr+ s+F++ ++k+++a+k+++svGmRfkm+fe+e+ +e+r++Gt+vgv+d ++++W++SkWrsLk Sopen08g004260.2 259 ASHAVTTQTMFVVYYKPRT--SQFIIGLNKYLEAVKHQYSVGMRFKMNFEGEEIPEKRFTGTIVGVED-SSSQWKDSKWRSLK 338 789***************6..9**********************************************.555*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-40 | 121 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-41 | 125 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-19 | 131 | 233 | No hit | No description |
Pfam | PF02362 | 1.2E-21 | 133 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-21 | 133 | 235 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.055 | 133 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-32 | 259 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.4E-6 | 562 | 616 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.58E-12 | 574 | 656 | No hit | No description |
PROSITE profile | PS51745 | 24.401 | 580 | 661 | IPR000270 | PB1 domain |
Pfam | PF02309 | 6.7E-6 | 625 | 664 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MENQGSFMSN QQHQQHNFSA EVSGEDELCQ ELWRLCAGPL VDVPKNEERV YYFPQGHMEQ 60 LEASTNQELN QSIPLFNLQP KILCRVLHIQ LLAEQDTDEV YAQIALLPEA DQVEPTSPDP 120 SLPEPPRPKV HFFCKVLTAS DTSTHGGFSI LRKHANECLP PLDMTQATPA QELVAKDLHG 180 FEWHFKHIFR GQPRRHLLTT GWSTFVSSKR LVTGDSFVFL RSGKGEVRIG IRRLARQPSS 240 MPQSVISSQS MHLGVLATAS HAVTTQTMFV VYYKPRTSQF IIGLNKYLEA VKHQYSVGMR 300 FKMNFEGEEI PEKRFTGTIV GVEDSSSQWK DSKWRSLKVQ WDEPASVPRP DRVSPWDIEP 360 FVASVATPLV PPMGVKNKRH RAHNEPKVSE PVPAAALAAW IPSAQFNPVI EGQSSDNPFS 420 LHTSQTNSTA TNSTFKARVD GIWSASKVNA SLNMLLDETE ASKSASPRPA FPSFASSQFG 480 KQNDLLLPSL DDERKCDTIT SCRLFGIDLK CPSFGSVNEN PPLEPANNSD GSAEGCSGNL 540 TSAGDSEDNS GLSRDSEDQK QEQLNPPPKE VHIKQVSSTR TRTKVQMQGV AVGRAVDLTK 600 LYGYDELRRE LEEMFDIQEE LHARNKWEIV FTDDEGDMML MGDYPWSEFC NIAKRIFICS 660 SQDIKSFSAG TKSPSCLESE TTAST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-172 | 26 | 361 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-172 | 26 | 361 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-172 | 26 | 361 | 17 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM565127 | 0.0 | HM565127.1 Solanum lycopersicum auxin response factor 12 (ARF12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083562.1 | 0.0 | auxin response factor 18-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A3Q7HIF4 | 0.0 | A0A3Q7HIF4_SOLLC; Auxin response factor | ||||
STRING | Solyc08g008380.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 1e-171 | auxin response factor 18 |