PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g003120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 413aa MW: 46228.4 Da PI: 9.3924 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.2 | 2.5e-19 | 32 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ + + +++ qC++k+e+l++ry+++k+++ + t + s++ +fd+++a Sopen08g003120.1 32 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAATVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSCpTGRFFSSWFFFDNMDA 123 8***********************************9977766667788999*******************99987888899*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-19 | 31 | 124 | No hit | No description |
PROSITE profile | PS50090 | 6.899 | 33 | 93 | IPR017877 | Myb-like domain |
SMART | SM00595 | 1.1E-9 | 40 | 129 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MSSNVDSTVV VAEDAVPEEK PPPPVRRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA 60 DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN 120 MDAMENGTTV AAIRSNNQQI AEKQQAVTAV SGDGYALKTM MDQNFLKLKI NQKNSIDSPP 180 NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGSNKQEHP HDVEFSSGYR MKNGVSMKAK 240 RTGRIIGDVN GFDQGGIRGG GNFVMNPNFD CDEGSEYNGS NASDGFHIRN MGVSSSRRSY 300 NSGNVEQQPN LDSRFSPGLS KFGKKGGGGG GGVGMKRGRD PVEEMVLSIK LLGEGFMKME 360 KMKMEMAKEV EQMRMEMEMK RNEMILESQK QIVEAFVKVL GEVHKNKNAK PES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084064.1 | 0.0 | protein FIP2-like | ||||
TrEMBL | A0A0V0IKW1 | 0.0 | A0A0V0IKW1_SOLCH; Putative trihelix transcription factor ASIL2-like | ||||
STRING | PGSC0003DMT400052836 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12774 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 4e-31 | Trihelix family protein |