PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g003120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 413aa    MW: 46228.4 Da    PI: 9.3924
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g003120.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.22.5e-1932123187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                       +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ +     +    +++ qC++k+e+l++ry+++k+++ +  t +  s++ +fd+++a
  Sopen08g003120.1  32 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAATVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSCpTGRFFSSWFFFDNMDA 123
                       8***********************************9977766667788999*******************99987888899*******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1931124No hitNo description
PROSITE profilePS500906.8993393IPR017877Myb-like domain
SMARTSM005951.1E-940129IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSSNVDSTVV VAEDAVPEEK PPPPVRRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA  60
DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN  120
MDAMENGTTV AAIRSNNQQI AEKQQAVTAV SGDGYALKTM MDQNFLKLKI NQKNSIDSPP  180
NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGSNKQEHP HDVEFSSGYR MKNGVSMKAK  240
RTGRIIGDVN GFDQGGIRGG GNFVMNPNFD CDEGSEYNGS NASDGFHIRN MGVSSSRRSY  300
NSGNVEQQPN LDSRFSPGLS KFGKKGGGGG GGVGMKRGRD PVEEMVLSIK LLGEGFMKME  360
KMKMEMAKEV EQMRMEMEMK RNEMILESQK QIVEAFVKVL GEVHKNKNAK PES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084064.10.0protein FIP2-like
TrEMBLA0A0V0IKW10.0A0A0V0IKW1_SOLCH; Putative trihelix transcription factor ASIL2-like
STRINGPGSC0003DMT4000528360.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127741617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-31Trihelix family protein