PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g002490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CO-like | ||||||||
Protein Properties | Length: 348aa MW: 38570.8 Da PI: 5.1512 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.8 | 3.9e-07 | 10 | 43 | 3 | 36 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 +++C+ ++ + + fC+ + +lC +C +++H Sopen08g002490.1 10 AKRCDACKATPSTVFCKADMAFLCLTCDSKIHAA 43 579*****************************54 PP | |||||||
2 | zf-B_box | 25.1 | 3.6e-08 | 53 | 98 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C + +H+ H+++p+ Sopen08g002490.1 53 VWVCEVCEHAPASVTCKADAAALCITCDQDIHSAnplarrHERIPV 98 689*****************************66889999999885 PP | |||||||
3 | CCT | 67.7 | 3e-23 | 284 | 327 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Sopen08g002490.1 284 RKARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 327 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.855 | 8 | 55 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.5E-11 | 8 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.47E-7 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.751 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-6 | 53 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.26E-7 | 54 | 98 | No hit | No description |
SMART | SM00336 | 3.4E-9 | 56 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.708 | 284 | 326 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.0E-17 | 284 | 326 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MVAESWSTTA KRCDACKATP STVFCKADMA FLCLTCDSKI HAANKLASRH ARVWVCEVCE 60 HAPASVTCKA DAAALCITCD QDIHSANPLA RRHERIPVVP FYDSASASSS RGAAADGNDD 120 PQQHDDETEE EEAEAESWLL QAPSTNNTQG IEYKSVEYLF SDVDPYVEMD IIADQKPSND 180 IAQLHNQEEY KEDCVVPHVQ NNKNDIQLQG PVVDGYPTYE IDFSGGSKPF MYNFTTQSIS 240 QSVSSSSMEV GVVPDHNTMT DVSNTFVRNS AIDGLPNPVS SLDRKARVLR YREKRKNRKF 300 EKTIRYASRK AYAETRPRIK GRFAKRTEND VGDSLVASDA SYGVVPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084938.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 3e-96 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A3Q7HHB6 | 0.0 | A0A3Q7HHB6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g006530.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 2e-91 | CONSTANS-like 4 |