PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g031930.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 479aa    MW: 52074.8 Da    PI: 6.1878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g031930.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67e-063684061154
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Sopen07g031930.1 368 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 406
                       5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.49E-7349410No hitNo description
PROSITE profilePS5088812.335357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-12367423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0064368412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAEEFQLGRG NWWESSTSAS STTTSSSRNK FIDSGISSCT TPSASSTTGL SSMASNFVNW  60
PTEIHEDIKV RSENSSMVFS GTDSHKRYAS ESSVGGGGGG GGGGVGQDVL SVDDPNLQIM  120
GLGLSSQGLD WNQPFFRSEK SGSGFRSLIQ EGLSSNANYQ QEGTCQEQDH NNWSTQKLYH  180
GNSDDSSVND YNKQLFSGHN NNLENSAVPY GSPSNMLQGL LISDLNSQQQ ESNNFSSVSR  240
SLYYNPSYNN QPNCDVNIPT STSSSSWSKF PQFLRTSDPS KVVQQWPLSQ SPPHFSGGTS  300
FWNATSAAAE DVRSGFLPQL PTNPTVDEKP KHTGEVRNIS TVTKKNSSET SNKRPRNEAP  360
SPLPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHDQV NVLSTPYMKS  420
GASIQHQQNT GDKSNVNPEG GKQDLRSRGL CLVPVSSTFP VTHETTVDFW TPTFGGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080963.10.0transcription factor bHLH123-like
TrEMBLM1BNV30.0M1BNV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000495040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-65bHLH family protein