PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026510.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 429aa    MW: 48646.3 Da    PI: 5.4159
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.41.3e-93374161373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPil 91 
                       l++lLl+cA a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r    +y   +  + s++ + + +++++l  ++++ P++
  Sopen07g026510.1  37 LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASR----VYPNATNLHGSSNLERRLMSVTELagYVDLIPWH 125
                       5799***************************************************....55444444444333455555555577******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                       +f++ + N+ I++a+e++++vHi+Df+i++++QWp+L++a+a+RpegppslRi + +   ++    + + ee+g+rLa+fA+  +vpfef+v+
  Sopen07g026510.1 126 RFGFCASNSVIYKAIERQTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPQVpplLNVSSEEVGHRLANFAKFRDVPFEFHVI 218
                       ******************************************************988755558899999***********************9 PP

              GRAS 182 ....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysal 267
                           ++  l++l++++L+++ +Eal+Vn++  l +l+d+++       rd +L+ vk+l+P +v++v++++d+ n +++  r++ +++y +  
  Sopen07g026510.1 219 edlnYEMFLSQLNPSTLQIRDDEALVVNCQNWLRYLHDDEQIKGAlsSRDIFLDRVKDLNPCIVTIVDEDCDLgNLTTLTSRIATCFNYLWIP 311
                       777555578899*******************99999876543333457*************************999***************** PP

              GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                       fd+le+ lp++s++r  +E+  +g +i+n++  eg++r+er e+ +k ++r+e++G+ +vp+se++ k++k+ll +++ ++g++ +ee++ lv
  Sopen07g026510.1 312 FDALETFLPKDSKQRLDYEAD-IGHKIENIIGFEGNQRIERLESCNKFSQRMENSGYMSVPFSEETIKEVKSLLDEHAsGWGMK-KEEHDMLV 402
                       *********************.********************************************************666555.45677899 PP

              GRAS 360 lgWkdrpLvsvSaW 373
                       l+Wk+++ v +++W
  Sopen07g026510.1 403 LTWKGHNSVYATSW 416
                       ******99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.4811397IPR005202Transcription factor GRAS
PfamPF035144.6E-9137416IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNSTTIPLQN PSFFNNSQSS LAGALQGCIG SLDGACLEKL LLHCASALEN NDVTLAQQVM  60
WVLNNLASSN GDPNQRLTSW FLRALISRAS RVYPNATNLH GSSNLERRLM SVTELAGYVD  120
LIPWHRFGFC ASNSVIYKAI ERQTKVHILD FSITHCMQWP TLIDAIAKRP EGPPSLRISV  180
PSWRPQVPPL LNVSSEEVGH RLANFAKFRD VPFEFHVIED LNYEMFLSQL NPSTLQIRDD  240
EALVVNCQNW LRYLHDDEQI KGALSSRDIF LDRVKDLNPC IVTIVDEDCD LGNLTTLTSR  300
IATCFNYLWI PFDALETFLP KDSKQRLDYE ADIGHKIENI IGFEGNQRIE RLESCNKFSQ  360
RMENSGYMSV PFSEETIKEV KSLLDEHASG WGMKKEEHDM LVLTWKGHNS VYATSWVIVP  420
PPHMDMSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-573841634418Protein SHORT-ROOT
5b3h_E3e-573841634418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081040.10.0scarecrow-like protein 32
TrEMBLA0A3Q7HE770.0A0A3Q7HE77_SOLLC; Uncharacterized protein
STRINGSolyc07g052960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-119GRAS family protein