PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g025040.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 80aa    MW: 9262.53 Da    PI: 7.6824
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g025040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.87.5e-262373151
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                      kpr rWt eLHe Fv+av++LGG+  AtPk+i++lm+ +++t eh+kSHLQ
  Sopen07g025040.1 23 KPRFRWTVELHEMFVKAVNELGGPYDATPKNIVKLMDDEDITPEHIKSHLQ 73
                      79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-232273IPR009057Homeodomain-like
SuperFamilySSF466897.88E-152274IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-202373IPR006447Myb domain, plants
PfamPF002491.1E-72774IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MTEGSSKKQR CDRVVASHDL NRKPRFRWTV ELHEMFVKAV NELGGPYDAT PKNIVKLMDD  60
EDITPEHIKS HLQNPVSWGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-162374253Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-162374253Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-162374152Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-162374152Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-162374152Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-162374152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-162374253Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-162374253Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-162374253Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-162374253Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-162374253Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-162374253Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754464e-73HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755194e-73HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025887824.19e-50myb family transcription factor PHL12-like
RefseqXP_027774019.11e-49myb family transcription factor PHL8-like
SwissprotQ9SAK56e-15APL_ARATH; Myb family transcription factor APL
TrEMBLA0A3Q7HE166e-48A0A3Q7HE16_SOLLC; Uncharacterized protein
STRINGSolyc07g049640.2.12e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120621623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.23e-17G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]