PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g002740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CO-like | ||||||||
Protein Properties | Length: 384aa MW: 42498.7 Da PI: 6.86 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.1 | 6.4e-07 | 25 | 61 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtvv 40 + C+ ++ + fC+++++++C +C + H +H++v Sopen07g002740.1 25 KSCEYCHLAAALVFCRTDNTFVCLSCDTRLHARHERV 61 68*****999************************976 PP | |||||||
2 | zf-B_box | 21.7 | 4.1e-07 | 61 | 106 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC C +H+ H++vp+ Sopen07g002740.1 61 VWVCEVCEHAAASVTCRADAAALCLACDRDIHSAnplarrHERVPV 106 689******99*********************66899999999986 PP | |||||||
3 | CCT | 69.8 | 6.7e-24 | 305 | 348 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Sopen07g002740.1 305 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 348 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.456 | 22 | 63 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.5E-7 | 22 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-5 | 25 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.81E-8 | 27 | 63 | No hit | No description |
PROSITE profile | PS50119 | 10.85 | 59 | 106 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-5 | 60 | 106 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-9 | 64 | 106 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.638 | 305 | 347 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.6E-18 | 305 | 347 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGIFREAPNC FPGGWNTGAA ARMAKSCEYC HLAAALVFCR TDNTFVCLSC DTRLHARHER 60 VWVCEVCEHA AASVTCRADA AALCLACDRD IHSANPLARR HERVPVVPFY DPVESVVKST 120 AATLLVSING TTTTTTTTIA PELSKVDTCI GHHENNNDPW IPPNTITSKL PLNTEMKGMD 180 FIFTDSENFL DFDYPACVDT QSQPHYNSSN DSVVPVQTNT PIKSLPFHHQ EKHFEIDFTQ 240 SHIKSYNTPS LSVSSSSLDV GIVPDGSSIS EISYPYIRTM NNSNISIDLS NSANHQGEKL 300 LGLDREARVL RYREKKKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTDG SAGAGEFDDV 360 DGIFSGADFI AAESRYGVVP SFLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU636698 | 0.0 | EU636698.1 Solanum lycopersicum CONSTANS-like protein mRNA, complete cds. | |||
GenBank | GQ261228 | 0.0 | GQ261228.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI010 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080494.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A3Q7I061 | 0.0 | A0A3Q7I061_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g006630.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-86 | CONSTANS-like 5 |