PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g033900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 845aa MW: 93491.3 Da PI: 6.8273 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.6 | 2.8e-19 | 317 | 416 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ + Sopen06g033900.1 317 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSRID-PG 407 99**************************666667778***************9989999999***9.********************887.78 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv+++++ Sopen06g033900.1 408 GKLVMGFRK 416 878888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-21 | 314 | 418 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-30 | 314 | 419 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.15E-24 | 315 | 416 | No hit | No description |
PROSITE profile | PS50863 | 11.321 | 317 | 418 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-16 | 317 | 416 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 317 | 417 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.086 | 541 | 591 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.0E-11 | 546 | 588 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MGSMICMNEL CRATTSVEWK KGWGFKSGGF AKLCYNCGSA FENFVFCETF HPDESGWREC 60 RTCRKPIHCG CIASKYLYEY LDYGGVTCIK CAHHLDGHSI RPIQIPGDDF PIGNLGSKSA 120 KPLGIENKID ENDFERRRFM QTNEPGQLFQ TQRNDKKQDT MLPIGNVGTC FSNLNQQNIG 180 ASLFGKPDNE RPSQGVKDMY DSINQPSLNF CLSTPIGTSS SGQPFLGGDV EGREQSKTSP 240 FQQAQRARHI FPKPPKPSPT SGSESVKGMV SQARIARPPA EGRGGRSQLL PRYWPRITDQ 300 ELEQIAGDLK STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPINQSE GLPIRIQDIK 360 GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVI FSRIDPGGKL VMGFRKATNN 420 VDMQDPQTPN LPSGNGSGET SFPGMADNFP NGGRTSDDTM NRQVPMSEKK KARNIGSKNR 480 RLLMHADDAM ELRITWEEIQ ELLRPSPTAK PNIVVVEDCE FEEYEEAPVF GKRTIFTARS 540 SGDQEQWAQC DSCSKWRRLP LHILLPAKWT CSDNIWDSRR CSCAAPDEIS PRELEALLRV 600 GKDPKRRKLV ENNEDLESSG LDALATVAAS DMGDSIGDMG EPSVGATTKH PRHRAGCSCI 660 VCIQPPSGKG KHHPTCKCNV CLTVKRRFKT LMLRKKKKQS EREAELAQAK DQVPPKDESE 720 TDGMTSGVEL LQMNHSENEH MNHSDNERNS NGDQVEEFGP GKGQLDLNCH PNRDDDMLAE 780 ATAGMSMTSL VNATNLPLEY LTQNRLESLG NSLLSQAASE SEGHPPDNGF GKTADVESGG 840 KGAKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-69 | 295 | 424 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 601 | 607 | KDPKRRK |
2 | 684 | 695 | KRRFKTLMLRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078927.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A3Q7H4D9 | 0.0 | A0A3Q7H4D9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g082520.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Publications ? help Back to Top | |||
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