PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g031640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 527aa MW: 58014.6 Da PI: 9.2517 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Sopen06g031640.1 63 FICEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Sopen06g031640.1 140 WKCEKCSKKYAVQSDWKAHTKIC 162 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 62 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.51E-7 | 62 | 85 | No hit | No description |
Pfam | PF12171 | 6.4E-5 | 63 | 85 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 63 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 105 | 135 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 128 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.51E-7 | 135 | 160 | No hit | No description |
SMART | SM00355 | 130 | 140 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MMSDDGLSSL AFIQDPNSNP TNNNPNPNSN PSAKRKRNLP GKPDPDAEVI ALSPKSLMAT 60 NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRNKNEVI KKKVYICPEK TCIHHDPSRA 120 LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHTK ICGTREYKCD CGTLFSRKDS 180 FITHRAFCDA LAEESARFTS VPSTANLNFR NEILLNGGFG NTNLQQSTGN PQFGSNLFRP 240 EFMGLGLDPA ISHHHQPQLN NVDGQKPRIP LWLDNNMNPN PGNDFLVASS SSTTSNLPHH 300 ELVQIAAHNN NQQWFINGTG VGDDSGIGSS SSQLPSRVLL KEEEENKRNM SETISSMYYN 360 NHHNETTAPA THMSATALLQ KAAQMGSTRS NSALFGTGFG LMGSSFSKSN GQGQFATHDQ 420 NFNGLMMNSP NNNSNQGNRL LFGDMNSSSL EGNASGKNSD PFNLMPRNNK GKQVNLSGNE 480 AIEGGLTRDF LGVGGNESRP FLSKNELAKF GNISGSAMGL SDYSETH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-37 | 136 | 201 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 8e-37 | 136 | 201 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079730.1 | 0.0 | zinc finger protein BALDIBIS-like | ||||
TrEMBL | A0A3Q7H0A7 | 0.0 | A0A3Q7H0A7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g075250.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-106 | C2H2-like zinc finger protein |