PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g022470.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 502aa    MW: 58033.8 Da    PI: 9.101
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g022470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.3e-07476498326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +lC+f+a+ G C yG +Ck+ H+
  Sopen06g022470.1 476 KKLCHFYAQ-GRCYYGLSCKYLHD 498
                       579******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.6E-889135IPR003034SAP domain
SuperFamilySSF689064.21E-790135No hitNo description
PfamPF020379.4E-10101134IPR003034SAP domain
PROSITE profilePS508009.926101135IPR003034SAP domain
SMARTSM005133.8E-5101135IPR003034SAP domain
PROSITE profilePS5010314.483473500IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6473498IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5476498IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4476498IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGSAEQPYDV SESDSDYDSD DSQDDPIFDL LEETQSSLSK LSIKKQKSMD IMSARRNVSK  60
ALEDCVEEEK DLEEVVIVPE LDEKDKKSYE TVQKIIKAGQ IEKLKVEQCK VYLRKHGLRL  120
TGTKDTLIQR IKEHTDILDG RGEEKYPPSS FVLNCKGDAC TGDVVMFEQN VYEMFSIASR  180
SATGPPCGTR IVAGRIVKES YGAKKQQHTF TVEVLWSKGE KPLPPLHPLL IKGRNLYRLK  240
TLRQKWDDEA ERQKILSEKH ARGSVARSSR ETRVEEKEMR KMRRENRVST DYKEKKTVAE  300
GKGKQLHSRS MNSLNKNDQP QVEVVYNSQK DEQKQFRNYT NVVIQENVYP RENRPEERPN  360
QRQPLTNVNL NDPSSNREKH NSNMHRHNSN THMPMWRGSS YGGNTYYYNI PTWRGYSDGS  420
YNNCNTSRSP LEGHSHMYTG GHGHSQNMNY KSPQRTDNWQ ARNGKRPTQG QREEQKKLCH  480
FYAQGRCYYG LSCKYLHDSV GI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077910.10.0zinc finger CCCH domain-containing protein 62-like isoform X1
TrEMBLA0A3Q7GY720.0A0A3Q7GY72_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000125400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA330388