PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g007140.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 434aa MW: 49666.6 Da PI: 8.1593

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g007140.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	25.1	3.8e-08	330	418	11	99
NF-YC 11 ekatdfknhelPlarikkilkade.dvkmisaeaPvllskacelfileltlrswlhaeenkrr.tlkksdiaaavtrtdifdflvdivprd 99 +++++ + ++P r+++i+k ++ +++m+ ea l+ ka e f le+ r + +r+ + + ++++v++ fdfl d +p++ Sopen06g007140.1 330 DEKSESALYQFPHNRVHRIIKNENaEIRML-HEATFLVNKATEKF-LEVFCREAYSCSFLDRKsYVGYNHLSSVVSKRPRFDFLSDFIPQK 418 4555666789*********876266665.79*******9.67877776666666665168899*****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.99E-13	321	417	IPR009072	Histone-fold
Pfam	PF00808	2.1E-8	339	402	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.9E-16	340	417	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MPKKSNGNSD NHDRDEPEDF VIPSSSAESQ DADETEEESD DVQNVHKEYV SDTDKEDEEE 60 EEEEKVESSK VGNTNSRGRE EDLEVQKKVY RRKGKKIVDG SGQNESENLK IYTRKKKVIE 120 KEKEVEEKEQ NVGAKIATSK NDYSEKNMKA KKEDKVNEGK TAKNNGDSSR GGKNEKRNNK 180 DERREVEGET KLAKKGKSNG GSSHGSVIKK EENKKKKRTD ERERERQSSK KAKINGDSSQ 240 LKKEEKNMKK TQNKKEGDEE AEENLVKKSN SNGVASPAKK EKMKGEKEKE GKTNNGKVKD 300 EAISNGTTKK NEEKKLKAKR KREDDEEEED EKSESALYQF PHNRVHRIIK NENAEIRMLH 360 EATFLVNKAT EKFLEVFCRE AYSCSFLDRK SYVGYNHLSS VVSKRPRFDF LSDFIPQKVR 420 AEDALAEIPK SAET

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MPKKSNGNSD NHDRDEPEDF VIPSSSAESQ DADETEEESD DVQNVHKEYV SDTDKEDEEE  60
EEEEKVESSK VGNTNSRGRE EDLEVQKKVY RRKGKKIVDG SGQNESENLK IYTRKKKVIE  120
KEKEVEEKEQ NVGAKIATSK NDYSEKNMKA KKEDKVNEGK TAKNNGDSSR GGKNEKRNNK  180
DERREVEGET KLAKKGKSNG GSSHGSVIKK EENKKKKRTD ERERERQSSK KAKINGDSSQ  240
LKKEEKNMKK TQNKKEGDEE AEENLVKKSN SNGVASPAKK EKMKGEKEKE GKTNNGKVKD  300
EAISNGTTKK NEEKKLKAKR KREDDEEEED EKSESALYQF PHNRVHRIIK NENAEIRMLH  360
EATFLVNKAT EKFLEVFCRE AYSCSFLDRK SYVGYNHLSS VVSKRPRFDF LSDFIPQKVR  420
AEDALAEIPK SAET

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015080065.1	0.0	ABC transporter F family member 4 isoform X1
TrEMBL	A0A3Q7GSX9	0.0	A0A3Q7GSX9_SOLLC; Uncharacterized protein
STRING	Solyc06g016750.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9304	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-26	nuclear factor Y, subunit C10