PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g003800.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 178aa    MW: 20433.9 Da    PI: 5.726
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g003800.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.21.1e-5331126297
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dyveplk yl+k+rele
  Sopen06g003800.1  31 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHNEKRKTLNGDDICWALGSLGFDDYVEPLKRYLHKHRELE 123
                       79******************************************************************************************* PP

             NF-YB  95 gek 97 
                       ge+
  Sopen06g003800.1 124 GER 126
                       996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5130149IPR009072Histone-fold
SuperFamilySSF471131.71E-4033151IPR009072Histone-fold
PfamPF008082.8E-2736100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.6E-196482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.6E-1983101No hitNo description
PRINTSPR006157.6E-19102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MVDNNINILR SKYDRESSNY NTISEDGLIY KEQDRLLPIA NVGRIMKQIL PPNAKISKEA  60
KETMQECVSE FISFVTGEAS DKCHNEKRKT LNGDDICWAL GSLGFDDYVE PLKRYLHKHR  120
ELEGERINQS KGVGLGNNIE DQRGRDDDEL TQRGSTIPFK ITIMDHKGEN NFLPTRPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4331121292Transcription factor HapC (Eurofung)
4g92_B2e-4331121292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240535.21e-130nuclear transcription factor Y subunit B-4-like
SwissprotO822481e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A3Q7GRX41e-128A0A3Q7GRX4_SOLLC; Uncharacterized protein
STRINGSolyc06g009010.1.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-60nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]