PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g028030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 218aa    MW: 25476.8 Da    PI: 10.2512
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g028030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.3e-131150342
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      ie+ ++r+++  kR++ +lKK  EL +LCd+eva +i+++
  Sopen05g028030.1 11 IEDGTKRKISHDKRLKVLLKKSDELKTLCDVEVATVIYGP 50
                      99************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.872149IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-6161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-17296IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-131158IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-53859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.1250.108.5E-486160IPR012351Four-helical cytokine, core
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTRNKVNYAL IEDGTKRKIS HDKRLKVLLK KSDELKTLCD VEVATVIYGP YRNEPYAFPN  60
NTVVRNTFIK FKELSILDRS KKMVTREEFT MKRIKKLEEQ LQKIRKENRV KEMTNEMYEL  120
FNRKTLSVDM STSYLNDLRC VIKKNLKQVH ELMIKEADGE GFTSNAPEPI VEPMKSRPAA  180
ARLLFSVPYP SYRIFQVSQS CVSSVLPPQI ERPPLTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11525KRKISHDKRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321632.11e-117MADS-box transcription factor PHERES 2-like
TrEMBLA0A3Q7HEA11e-113A0A3Q7HEA1_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000886541e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.16e-29AGAMOUS-like 38