PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g015160.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 353aa    MW: 40744.5 Da    PI: 4.4223
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g015160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.85.9e-13111196286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W+++e  +L+e+  e+  +l+r++l++ +W ev++k+ +  g+ ++ ++C++ ++ l+k+ykk+ + ++k   + +s++ +f++++
  Sopen05g015160.1 111 WSEEESFVLLEVWGERYLELGRRSLRAEDWGEVAEKVtEMVGVDKTEVECRNQLDVLKKKYKKEITKMEKTGGGFHSKWTFFKKMD 196
                       *************************************5567**********************99999988899999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-19110198No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNDSDDETPY SSRPNAAIYN TSSLRSRRSI RNPTSYPRNT HYEYNNEFQY NHHGGGAAAH  60
DDDESDDEEE NQEFSSGEND VDNFQGKKKR KLETLVSNYN FAPRSGSKDI WSEEESFVLL  120
EVWGERYLEL GRRSLRAEDW GEVAEKVTEM VGVDKTEVEC RNQLDVLKKK YKKEITKMEK  180
TGGGFHSKWT FFKKMDMLMN LRMKGHCGLG CGLDSGEYVF MDPRMYLDRS NVLDEMRDSP  240
AGSDADNDEE EDEQGSGGWE GDDASAKLLA DSIQRFGQIY EKIENSKRKQ MMELEKMRRD  300
FQRELELQKK QIIERAQVEI AKIRGNGEND DDEDNEDEDG EETDNISGEK LRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074650.10.0trihelix transcription factor ASIL2 isoform X1
TrEMBLA0A0V0I9M60.0A0A0V0I9M6_SOLCH; Putative trihelix transcription factor ASIL2-like
STRINGSolyc05g018350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120602022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-76Trihelix family protein