PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g011010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YB | ||||||||
Protein Properties | Length: 271aa MW: 30052.8 Da PI: 4.8313 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 126.7 | 8.8e-40 | 55 | 147 | 3 | 95 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 e drf+Pi nv+rim+++lP +a is+++k vqec+sefi+fvt++a+d cq+e+r+ti ++d+l+al ++Gf+dy++pl++yl++y e++g Sopen05g011010.1 55 EADRFMPIENVVRIMRNILPPHAMISDESKVAVQECISEFIGFVTDQANDDCQHEQRNTIMAEDVLFALKNFGFDDYIKPLTLYLHRYPEVDG 147 78***************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-37 | 53 | 153 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.62E-31 | 57 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.5E-19 | 59 | 123 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.2E-9 | 87 | 105 | No hit | No description |
PRINTS | PR00615 | 5.2E-9 | 106 | 124 | No hit | No description |
PRINTS | PR00615 | 5.2E-9 | 125 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MNNGYRVGSR KGRFRGRRSA TTSLTLCTER GLRQAILLHP TNASNLEDFI CPFPEADRFM 60 PIENVVRIMR NILPPHAMIS DESKVAVQEC ISEFIGFVTD QANDDCQHEQ RNTIMAEDVL 120 FALKNFGFDD YIKPLTLYLH RYPEVDGGAD RSLKRESLLL KRPMVGPASG YSITPNHLPP 180 NLDINHPPPM GDDFMKEDAS NTSTSRCTIS TMDNEVDSLA KGGGGSRNSG SGDVVGSQDL 240 EWGEETVCQI KFQQLVVLAD VNEVELSTKG E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-41 | 55 | 144 | 8 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075334.1 | 1e-169 | nuclear transcription factor Y subunit B-2-like | ||||
Swissprot | Q84W66 | 8e-44 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A3Q7HA76 | 1e-134 | A0A3Q7HA76_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g015550.1.1 | 1e-135 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-45 | nuclear factor Y, subunit B6 |