PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g004940.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 790aa    MW: 90529.3 Da    PI: 6.7673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g004940.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.00038136184432
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.as...................k 32 
                       + n+ E+r+R ++ + f   r+ lP+ ++                   +
  Sopen05g004940.1 136 KTNILEQRYRINVGELFGHVRKKLPWaDPkvvkevvdlelykllgertA 184
                       45************************55455555555555555555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045584.9E-568164IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045573.8E-14167259IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
CDDcd008071.11E-137266576No hitNo description
Gene3DG3DSA:3.40.50.6203.2E-38266335IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523743.94E-86266578No hitNo description
PfamPF007496.5E-120266571IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
TIGRFAMsTIGR004409.9E-190267787IPR004514Glutamine-tRNA synthetase
PRINTSPR009874.6E-7270282IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780273284IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009874.6E-7299312IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.102.6E-43339443No hitNo description
PRINTSPR009874.6E-7444454IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6203.2E-38446495IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.105.0E-31496572IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507152.41E-56574784IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039509.5E-42574765IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.105.2E-30582692IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.108.6E-29693783IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MVKEDSNVLD LFLKIGLDEK TAKNTLANNK VTTNLTAVIH EAAVTDGCDR AVGNLLYTVA  60
TKFPANALNH RPTLLQYIVS TKIKTPVQLE AAFAFLASTA SENLKVHDFE EACGVGVEVS  120
KDDIERAVRE VFEEKKTNIL EQRYRINVGE LFGHVRKKLP WADPKVVKEV VDLELYKLLG  180
ERTAADNEKP VKKKKEKPAK TEDKAKVEET SAPKQSEEEL NPYLIFPTPE ENYKVHTEVY  240
FSDRPVLRAC NSKELLEKHL KVTGGKVLTR FPPEPNGFLH IGHAKAMFVD FGLAKERGGG  300
CYLRFDDTNP EAEKKEYIDH IKEIVGWMGW EPFKITYTSD YFQDLYELAV ELIRRGHAYV  360
DHQTADEVKE YREKKMNSPW RDRPIEESLR LFDEMKKGMI DEGKATLRMK QDMQNDNFNM  420
YDLIAYRIKF TPHPHAGDKW CIYPSYDYAH CIVDSLENIT HSLCTLEFET RRASYYWLLD  480
ALSLYQPFVW EYSRLNVSNT VMSKRKLNRL VTENWVDGWD DPRLMTLAGL RRRGVTSTAI  540
NAFVRGIGIT RSDSSMIQLS RLEYHIREEL NRTAARTLVV LNPLKVVITN LEAGLVMDLD  600
AKKWPEAPAD DASSFYKVPF SRVVYIERTD FRLKDSKDYY GLAPGKSVLL RYAYPIKCTD  660
VILADDKETV LEIRAEYDPS KTIKPKGVLH WVAEPSPGAD PLKVEVRLFD RLFRSENPAE  720
LDDWLGDLSP ESKVVIQNAY AVPSVSKATL GDRFQFERLG YFTVDKDSTS EKLVFNRTVT  780
LRDNYAKGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.0978731798Glutamine--tRNA ligase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076467.10.0glutamine--tRNA ligase
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A3Q7GEE90.0A0A3Q7GEE9_SOLLC; Uncharacterized protein
STRINGSolyc05g009220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213