PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g003740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 343aa    MW: 38626.5 Da    PI: 7.7276
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g003740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1062.1e-332276155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      kprl+Wtp+LH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
  Sopen05g003740.1 22 KPRLKWTPDLHQRFVDAVSQLGGPDKATPKSLMRVMNIHGLTLYHLKSHLQKYRL 76
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.2241979IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-312077IPR009057Homeodomain-like
SuperFamilySSF466894.48E-162178IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-232277IPR006447Myb domain, plants
PfamPF002495.2E-82475IPR001005SANT/Myb domain
PfamPF143793.9E-22152199IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALHQNAQQN KDMNLVLSSD AKPRLKWTPD LHQRFVDAVS QLGGPDKATP KSLMRVMNIH  60
GLTLYHLKSH LQKYRLGKSS VTDQSFDENK QEVKLDLCEI VPNDDDDDHT KGNEISRGLK  120
QRTYFDKELP QSDHKLSLGV CDGSQNHMNE SFQIARALQM QMDVQRKLHQ QIEVQRHLQL  180
RIEAQGKYLQ SVLKKAQETL AGYGCTSSGV ELAKAELSQL VSMVNMGCCP SSSLTEIDCS  240
ISKDIENKTS KEGILCSIES SLTSSESSAR KEGQNNSRNN KNSTCIGLPL NQESKGKKRS  300
RHNICGDEQS SAKRYLETID LNRKCPNEYD ENVKKVIDLN EYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-202178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-202178158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-202178158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-202178158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-202178158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-202178158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-202178158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-202178158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075023.10.0myb family transcription factor PHL8-like
TrEMBLA0A3Q7GAK00.0A0A3Q7GAK0_SOLLC; Uncharacterized protein
STRINGSolyc05g007890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60361932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.13e-75G2-like family protein