PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g001410.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 224aa MW: 24967.5 Da PI: 4.2574

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g001410.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	96.9	1.7e-30	54	137	2	87
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +eqdr++P nv+rim+ + P + is+dak t+ +c+sefi fvt ea+ +cqre+r+ti+ +d+ w + ++Gf+dy+epl y+ Sopen05g001410.1 54 QEQDRVIP--NVARIMRSTHPPHVNISDDAKRTMYHCISEFICFVTYEANAHCQREQRNTITEEDVDWVINKFGFDDYIEPLPYYF 137 68999987..************************************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-27	53	136	IPR009072	Histone-fold
SuperFamily	SSF47113	1.11E-22	61	140	IPR009072	Histone-fold
Pfam	PF00808	5.6E-17	62	121	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDNGNHVGGS GNGGFHSYGR SPQPTPADPP SPDMEMSLEL PAHLNQEVVD IIIQEQDRVI 60 PNVARIMRST HPPHVNISDD AKRTMYHCIS EFICFVTYEA NAHCQREQRN TITEEDVDWV 120 INKFGFDDYI EPLPYYFPPN SEDDGGECGS LTRESLLKRP MVDTASSSNI TPYNLPPNFP 180 MAHHHFVYPP PMGNGDMQGE ASTSQCAVAS VDTDVESPME EDKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-31	53	137	6	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075904.1	1e-168	nuclear transcription factor Y subunit B-6-like
TrEMBL	A0A3Q7GBK0	1e-153	A0A3Q7GBK0_SOLLC; Uncharacterized protein
STRING	Solyc05g005360.1.1	1e-157	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14016	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	5e-35	nuclear factor Y, subunit B6